RNA id: TU60672


Basic Information

Item Value
RNA id TU60672
length 2106
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G48560
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49871106 ~ 49873377 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGTGGAGTCCTGCCTGACGCGCATCACGAAGCTGGagttgcagcagcagcagcagcaggttgTGCAGCTGGAGGGGGTGGAGAACGCCAATGCACGGGCACTGCTGGGCAAGTTCATCAACGTGATCCTGGCACTGATGGCAGTGCTGCTGGTGTTCGTGTCCACGCTGGCCAACTTCATCACGCCGCTGATGAAGACGCGGGCGCGCGTGGCCGCCACCATGCTGCTGGCACTGCTGCTGTTCGCGCTGTGGAAGCACTGGGACCTGCTGGAGTTGTGGCTGCTGCCCAGCTGATCGGCTTGGGGCCGGCGGGCGACCGAtcgattaattgatttattggtgtttttttccatgacaCCGTATCGCGACAccaccccctcctccactctgcATTCTTTTCTATCCCAGAGGGGACAGTTTATACCGATagaaacatttgatttattttgattttttccaccatcagatgtttttgttctcggttttgttcctttatttatttatttttcaaaggtgtgtgaaagtgtgtagTTCCCCTGGAGGCAGCGTGGGGGGGCAGGTGTTGGCCCGGCCCCCCAAGGCTACACAGACTCCCAGCTCTGTGAACAGCCCTGCGGACCCCCACACTGTCCGCTGCCCTCCGCACTGGCTGTTATCTGGACGCAGGGGATGCTGGATGTTTCATGGCCGTGAACAGGGGAGCGAAGTGGGGCAGCAGGGCGCAGCAATGATGGAGacgggaggaagagagagagagagagagtgagtgtgatagagtgtgagagagtgaaaaagagagagagacagagagtgagtgtgatagaatgtgagagagagtgtcagcGTGGAGTCCAGCCCGCAGGGAACAGGAAGAGAACAGACTTGTGTCCAGGGGAGGAACAGGGTCGTGGCCAGACTGACAGTGGACGGGGAGACGGACCGGGGCAGGAGCGGCTGACTGGACTGAGCCACTGCGGCGGCACCAGCGCTGCCCGCTCTCCTGCCACTCTCCCTGACGGGTCACGGTGTGACTGTAGTTGGCGATTTGTTTTGACCGCTGTGTTCTGCTGTGTTACTTTGTCGAGGAGTATGCGACAGAGCTGCTGCACTGCCCCGCGTTTCCACAGACGTTtgaattttatatataaaagaagaaaacaaaagattaaaaaaaataaaactaaaggtGTGTTAGCGGTGACCCGCACCCCGGGTCAGTGTCCGGAGACCTGGTGAGCTGCATCCAGTGTCCGGGCCGCGTAGGCCGCTCAGCTCTGTGCTGTCCGCTCCGTGCTCCTTACTGCAGACAGAAggatttgtatgtttgtttttgcctttatttccatttctttaCGAAGCTCCGTCTGTGATGCTGTCGTCGTTCTTTTCCTGCCCGGAGAGTCAGATcttcacatgtatttatttattgattgattgattgattgtttgattggtttgtttatttatttacctctCCGCTCGCTCTGGCGCTACTCTCTCTGGTCAGTCTGCACGTCACCAGGGGCGGCTGCTGAGGCCCTGAGTGTCCGTGTTGCGCTCTGAGGACAGTGACTTTTACCTCGGTCCGTCTCTCTGGACTCTAGGGCTGCGCTGGGGCTGCAGGGAGCCTAGGGAGATGCTTACTGgggtttttaaattgttttcattttttaaattatttattaaattgtacGGCGAGTGTGCGGGCCGGGGCGGGGGGATGGTCACTGTTCTTTCGcacttgttatttattgttataaagTCTGTGCAGGGAGTGTGACCTGTGTGCGCCGGCCCAGAGCCCAGGACAGGATCCTTCCACAGTGAgcgacacacacagcaccttcTCCTGGTCAGAACACCTGCACCACTGCCCACCCCCGCCAGTgttcatgataataataatgtgtgtgtctttgtgcgtgtgtgtttgtttgtctgtctgtgtgtaagtgtgtctgtgtgtgtgtgtaagcgaGTGAGTGTGTCAAGtgtgtctttttgtgtgtttgtgtttgtgtgtgagcgagTCTGTGTGTaagtatgtctgtgtgtgtaagcaagTGTCTGTCTGGGTGAGTGTAAGCGAGTGTGTCTGTGTGNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60664 lncRNA upstream 13419 49857480 ~ 49857687 (+) True G48552
TU60552 lncRNA upstream 60140 49808148 ~ 49810966 (+) False AMCG00014038
TU60571 lncRNA upstream 77456 49793206 ~ 49793650 (+) True G48479
TU60553 lncRNA upstream 117079 49753584 ~ 49754027 (+) True G48467
TU60518 lncRNA upstream 123519 49746515 ~ 49747587 (+) False AMCG00014028
AMCG00014040 mRNA upstream 28791 49837425 ~ 49842315 (+) True AMCG00014040
AMCG00014038 mRNA upstream 57121 49808571 ~ 49813985 (+) True AMCG00014038
AMCG00014031 mRNA upstream 98322 49772161 ~ 49772784 (+) True AMCG00014031
AMCG00014037 mRNA upstream 99212 49770593 ~ 49771894 (+) True AMCG00014037
AMCG00014028 mRNA upstream 121937 49739312 ~ 49749169 (+) True AMCG00014028
AMCG00014050 mRNA downstream 37181 49910558 ~ 49916242 (+) True AMCG00014050
AMCG00014039 mRNA downstream 45250 49918627 ~ 49925703 (+) True AMCG00014039
AMCG00014049 mRNA downstream 53849 49927226 ~ 49929020 (+) True AMCG00014049
TU60549 other upstream 128592 49741852 ~ 49742514 (+) True G48464
TU60541 other upstream 147230 49723026 ~ 49723876 (+) True G48457
TU60542 other upstream 153678 49706843 ~ 49717428 (+) True AMCG00014032
TU60537 other upstream 167578 49703078 ~ 49703528 (+) True G48455
TU60536 other upstream 169163 49701251 ~ 49701943 (+) True G48454
TU60679 other downstream 40552 49913929 ~ 49914542 (+) True G48566
TU60704 other downstream 63438 49936815 ~ 49948082 (+) True G48578
TU60712 other downstream 82815 49956192 ~ 49956729 (+) True G48583

Expression Profile