RNA id: TU60704


Basic Information

Item Value
RNA id TU60704
length 1312
RNA type TUCP
GC content 0.58
exon number 2
gene id G48578
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49936815 ~ 49948082 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCTGAGTGTCCTCTGGGACAGTGCGAGTCTGGAGAGGAGAGCGGTGTGAAGACAGCGGCGCTAATCGAGCAGAGCGACGGGTAGAGACGGCTCTGGTACCGACAGGGTGGCACCGCGGCTGACGCTAATGTGATGGAGGACCCGTgagctgtagaggccagcgctctccctgactctggggaaagggctCCCACTGAGCAGCAACACTGGGAGCAGGAGTggggctccagtctgaggcaggacacagagcccacagctacTGAAGACAACCAGGGGCTGAGTGAGCAGCCcaggagcagacagagtgaggaggagctcaGGGGACAGGAGTCTGGCCACATGGCAGAGCCACACACTGAGGGGTCAACACAGGGACTCGGAACGCTGGGATCTGACACCgcagggtcaaaggtcatgcTAAAGGTCATAAAGCACGACCCTGAGCTGGACTGCACCCACACTGCGGATCTCTGCAAGACCCAGTCTCTGGGATCTGAGTGTGGACCTAGTGCAGCTGGTGCTGAGCTGGGCTCCACCAGAACACAGTGTGGACCCAGTCTGCTGTCTgatcacatcaaaacagaggacGACACACTGGAGTGTGTTTACACACTGGAGCCGAGAACACAGACTCCCTTCAGACATGCACTCAGTCATCTCAAAATTGACAATATTACAGACAGCGCCTGGGATCTGTggcctgagctccctgtagctggacagtgtgacctggggcctgagctccctgtagctggacagtgtggCCTGGggcctgagctccctgtagctggacagtgtgacccaCAGTCTGCTGCCTTGAGGACGGGGCTCAGTGGGGGGAGGGACAGTGCACTGAGTGGGGAGAGCCCATCATTGCAGCGCAGACAGCTGCGTCCCAGACCCCCTACACCACCTCGATCCTCCAGCTCCCCCTCCTCACCACTGCAGCATGGAAAACAGCGTCCCCATCACCAGCCCCAGAGTAGGAAGAGCCTCACAGGGGCATCACAGCTGATTAAGCAGCACAGCACTCACAGAGAGAAGACATTCCGCTGTGCCCATTGTGGGAAGTGCTTCTTTCGGGCACATCATCTCATcgcacaccagcgcattcacacaggagagaaaccgttcAGTTGTGACCaatgtgggaagagtttctctcaGATAGGTAGCCTCATCGCACACAGGCgcgttcacacaggagagagaccattctgctgtctgctgtgtgggaagagcttctctCGAACGTCTAATCTCAAAACACACCAGCGGATTCACACAGAGAAACCTTACAGTTGTGCCNN

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60672 lncRNA upstream 63438 49871106 ~ 49873377 (+) True G48560
TU60664 lncRNA upstream 79128 49857480 ~ 49857687 (+) True G48552
TU60552 lncRNA upstream 125849 49808148 ~ 49810966 (+) False AMCG00014038
TU60571 lncRNA upstream 143165 49793206 ~ 49793650 (+) True G48479
TU60553 lncRNA upstream 182788 49753584 ~ 49754027 (+) True G48467
AMCG00014049 mRNA upstream 7795 49927226 ~ 49929020 (+) True AMCG00014049
AMCG00014039 mRNA upstream 11112 49918627 ~ 49925703 (+) True AMCG00014039
AMCG00014050 mRNA upstream 20573 49910558 ~ 49916242 (+) True AMCG00014050
AMCG00014040 mRNA upstream 94500 49837425 ~ 49842315 (+) True AMCG00014040
AMCG00014038 mRNA upstream 122830 49808571 ~ 49813985 (+) True AMCG00014038
TU60679 other upstream 22273 49913929 ~ 49914542 (+) True G48566
TU60549 other upstream 194301 49741852 ~ 49742514 (+) True G48464
TU60541 other upstream 212939 49723026 ~ 49723876 (+) True G48457
TU60542 other upstream 219387 49706843 ~ 49717428 (+) True AMCG00014032
TU60537 other upstream 233287 49703078 ~ 49703528 (+) True G48455
TU60712 other downstream 8110 49956192 ~ 49956729 (+) True G48583

Expression Profile