RNA id: AMCG00014061


Basic Information

Item Value
RNA id AMCG00014061
length 900
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00014061
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 136864 ~ 247002 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGATGATATGAACATAGCTGACTTGGTTCAGACTGAAGACGTTGTCCAGCCCAGACTCTTCACAGCAGCGCAGCTTGGAGACTCTGTGACTCTGGAGTGCTTCATATCGACTGAGAGAATTAACTACCTGTCTTGGTTCAAGCAAACCGTTGGACAGAGACCTCGAGGAATTGTAACTTCTTATAGTTATCTAGAAGGCTTCACATTTTACAACGAGTTCCGCAATAACCCCCGCTTCACGTCAGACGCAGCCGCGTATTACTGTGTAACGATTTACCAAAACAGTGTGCAGTTTGGAAATGGAACCGTTCTGATGCTGAAGGGCTCTCAATCCAACAGAACCATTGTGCAGCAACCAGCGTCTTTCTCCGTCCAGCCAGGAGACAGTGTGACTCTGCAGTGCACAATACACACTGAGACCTGTGCAGGAGAGCACAGTGTTCATTGGTTCAGGCATGGCTCAGGAGAAGCCCTTCCAGGACTCATTTACACCCATGGGAACAGGAAGTCTAGTTTGCAGCTGAGCCCTGCTGTCCTGGTGCTGCTGGTGtccaactgtgtgtgtgtgctggtgatCGCTGTGCTCGTGTGCACCGGGAGGGGGCAGTGTGGGCGCGGTACAGGTCAAGCCAGCCTCAACCCCCTTGTCCTGGCCTTGGGGGCGTCAAacgctgtgtgtgtgctggtgatCGCTGTCCTCGTCTGCACCAGGAACGCGCGCTGCGCAGgAGATCCACAGTCCTCTCCTGATGCAGTAAAGACCCACACCAGTCACCAGGGCTGCAGTGTTGGTCACTGTGAGGAGGACGTCCAGAAGCTGCTTCTGGAAACACAGCAGAGAAAGGTGATGCAGAGACCCAGGGGATTGTGGGATAGAGAGGCTACACGTAAATAA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84405 lncRNA downstream 7494 169904 ~ 320321 (+) True G67587
TU84528 lncRNA downstream 638854 801264 ~ 801464 (+) True G67684
TU84529 lncRNA downstream 642127 804537 ~ 804746 (+) True G67685
TU84535 lncRNA downstream 819429 981839 ~ 1022813 (+) True G67690
TU84543 lncRNA downstream 1087689 1250099 ~ 1250314 (+) True G67698
AMCG00014062 mRNA upstream 643 124143 ~ 136221 (+) True AMCG00014062
AMCG00014065 mRNA upstream 34932 97427 ~ 101932 (+) True AMCG00014065
AMCG00014066 mRNA downstream 68168 230578 ~ 241128 (+) True AMCG00014066
AMCG00014068 mRNA downstream 89865 252275 ~ 257660 (+) True AMCG00014068
AMCG00014069 mRNA downstream 116720 279130 ~ 349175 (+) True AMCG00014069
AMCG00014071 mRNA downstream 216800 379210 ~ 386103 (+) True AMCG00014071
AMCG00014077 mRNA downstream 1025149 1187559 ~ 1188536 (+) True AMCG00014077
TU84388 other upstream 29742 58449 ~ 107122 (+) True G67577
TU84560 other downstream 1321375 1483785 ~ 1484093 (+) False AMCG00014099
TU84663 other downstream 1673022 1835432 ~ 1838125 (+) True AMCG00014104
TU84672 other downstream 1716681 1879091 ~ 1881041 (+) True G67801
TU84682 other downstream 1737810 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 1964462 2126872 ~ 2130145 (+) True G67896

Expression Profile