RNA id: AMCG00014071


Basic Information

Item Value
RNA id AMCG00014071
length 2134
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00014071
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 379210 ~ 386103 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGGGGCGGGACTGCGGCGGGGCTGCAGCGCCTCTCCggccgctctctctctcactctcttccgTGTGGGCGAGCGGAGCACAGCCCGCCTCCTCTCCCGGCAGCGGGGTTTTCCGGACCCGAGCCCAGCGATGCGTGTGCGCTGTCCAGCGGCTGCCGTGTAGGACAGGACTGCCAGAGACCATGCCCGGGGCGGGTAACAGCGTTTGGATCGCATTCCTTTTACTGCCTTCCATTTTCTTATATGCAGGTGCAGAAACAAAGATACTTGGTTTCATTGGGGAGGATGTGATCCTGCCGTGTGCctgcaaattaaataagcaCAACATATACCTAGTGTGGCAAATCGGTGAATCTTCTGTagtggatgcatttattaatggcAGACCATACACAGAAAATCAGAAGCTGGAATTCCAGAACAGAACGCGCTTGTTCGTCGCAGAGCAGATGGGAAACTGCTCCCTCCAGCTATCCAGTGTCTCCGCAGCAGATGAGCACACGTATACCTGCTACTATGAAGGAACTGTGATAGAACAAGTCGTGGTCTCTCTTGAAGTGGCTGCGCATTACAGCAATCCGGTGCTGTTGAGTCCCAACGAGTCTGCAGTGGCCGATGCACCAGAGAGCTACAGCTGCATAGCCACTGGGGGATACCCCAAGGGCCGGATTCACTGGATCCTCAACAACAGCAGTCTGGCCTATTCCCGAGACAACAGGCGTGACGTGGATTCCTGGGACAATGCCACGGGCACATACAGCTTGAGCAGCACCCTGAACATCAGCCTCTCCAGAACAGACGTTCTCACCTGCATGGTGGAGAACAGCCGCCTGCAGGTTAACATCTCTGCATCAAAGACCTTCAGCAGGACGGACGGAGGAAGTCCAGACTCCTCTGCGGACGCCCCTCCAGCCCTGAGAATTGTCATCCTGCCTGCTGTGGTTTGCTGCGGTTTTATCCTGGGTGCGATCTTAATTTGTCTGCTGATGAGAAAATTCAACATGTTTAAGacaAGAGACCCCAGCCCTGCCACTCCTGCCATCGGAGCAGAGAGACAACGCTTGAATGAAGAGCCAGTCTGACGGAGCATGCAGGCCTGAGCTGTCTTGGACGGGACCTGACCATGACCAGCTCGCTAACACTGAGACTGTCCAAGAGACTTCTAGCATTAAGCACAGACTCTCTCTGGCACCTGAGTTCTCCTGCTTCTCTTcactttacacagagagttgcaACCTATAAATATTAGTTTTACTGCAGTAATACCTCAGTTAACAAAGTAGACTTCGTTATCAGAAACTGTTACCTGAGGTAGAATTAAAACGGGAGGCAGGGGATGCGCTCCAGGTCTTCAGAGAAGGGGGGTTAAAGCATTATCATTAAATACAAACCAAATATATCATCAGATGTGTCTacaaacatgaaatatgcaGTAATGTGCTGCACTGAAGCCTTCCCTTGGCCTGCTGGGAATGAACCAGAGCTTATGATCTGTGTTTTCCACTCCAAAGAGATGCATTACACAGCACTGATGGTGACTTGGGTGACATCACTGCCAAAACCACAACTTCATAAATGTTCCATGAGAGGATATTGAGCAATGAGAGCGGGAAGGGGAAGTTGTGAGGAGCTCTGCTGATTGGACCAGCTGGGGCAGACGCATGCATCTCTCCACTGCTGAGCGTTTGATGATGTAAAGCACAACCCGTGGGTGAGTCTACAGGGCAAGGGCGTCATTCTCTACTCTGGAATTCCTTCATATGGCTTCTGTGTTTCCGTCTTCATTTCATTGTGTGCACAAAAACCCATTAATGACCGACTGAGTTTTAAAGGAGCTTCTTTCCCCAAGGATTCATTACCTGAGGTGTTGCTGTACTCTAACGACAGATCGTCCCCATGGGATTTTATTTGTGctatttttttacattgcatGCTAGTATGGTGTCACGTATGCCACATGTATGCCCCAGCTTTTggttttacatattttctgttcaattactttttataaGGGTATATGCTATGCATATGTGTAACATGTAAATTAAAccagctgtttttttatgattgtaaTATCCTGATATGGACAGAAAATTCAATGACTAAATTAAAGCTGGCTGATTAAATCTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84405 lncRNA upstream 58889 169904 ~ 320321 (+) True G67587
TU84399 lncRNA upstream 132208 147188 ~ 247002 (+) False AMCG00014061
TU84528 lncRNA downstream 415161 801264 ~ 801464 (+) True G67684
TU84529 lncRNA downstream 418434 804537 ~ 804746 (+) True G67685
TU84535 lncRNA downstream 595736 981839 ~ 1022813 (+) True G67690
TU84543 lncRNA downstream 863996 1250099 ~ 1250314 (+) True G67698
TU84544 lncRNA downstream 889888 1275991 ~ 1276216 (+) True G67699
AMCG00014069 mRNA upstream 30035 279130 ~ 349175 (+) True AMCG00014069
AMCG00014068 mRNA upstream 121550 252275 ~ 257660 (+) True AMCG00014068
AMCG00014066 mRNA upstream 138082 230578 ~ 241128 (+) True AMCG00014066
AMCG00014061 mRNA upstream 216800 136864 ~ 162410 (+) True AMCG00014061
AMCG00014062 mRNA upstream 242989 124143 ~ 136221 (+) True AMCG00014062
AMCG00014077 mRNA downstream 801456 1187559 ~ 1188536 (+) True AMCG00014077
AMCG00014083 mRNA downstream 848589 1234692 ~ 1244467 (+) True AMCG00014083
AMCG00014079 mRNA downstream 858368 1244471 ~ 1245448 (+) True AMCG00014079
AMCG00014078 mRNA downstream 898827 1284930 ~ 1285907 (+) True AMCG00014078
AMCG00014085 mRNA downstream 918941 1305044 ~ 1306528 (+) True AMCG00014085
TU84388 other upstream 272088 58449 ~ 107122 (+) True G67577
TU84560 other downstream 1097682 1483785 ~ 1484093 (+) False AMCG00014099
TU84663 other downstream 1449329 1835432 ~ 1838125 (+) True AMCG00014104
TU84672 other downstream 1492988 1879091 ~ 1881041 (+) True G67801
TU84682 other downstream 1514117 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 1740769 2126872 ~ 2130145 (+) True G67896

Expression Profile