RNA id: AMCG00014079



Basic Information


Item Value
RNA id AMCG00014079
length 978
RNA type mRNA
GC content 0.52
exon number 1
gene id AMCG00014079
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1244471 ~ 1245448 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGTGACCCCAACACCTCCCTGCCCTCAGCCTCCTATTTCATAATTGTGGGAGTGCCAGGCCTGCAGGAGCACTATACCACActcttcttcatcttcctcctcctcttcatggCCACCATCCTGGGGAACCTGCTGATCGTGGTGCTGGTGTCCCTGGACCCCCGGCTTCACACACCCATGTACTTCTTCCTGTGGAACCTGGCTGTCCTGGATATGCTGCTGACCATTACCATCATACCCAAGCTGCTGGCGGTGCTGCTGGGCTACAACAGGATCTCCTTCGCAGGCTGCTTCCTGCAGATGCACTTTTTCATTTCTATCAGTGCCACTGAAGGTTTCCTAGTTGGGGTCATGGCTTATGACCGGTATGTGGCCGTGGTGAAGCCACTTCATTACAACACCATCATCAGCACCAGGGTGTGTCTCATGATGATGGCCACAGTCTGGGCACTGGGCTTCCTTGCCCCCCTGGTGTCTGTGGCTCAGGCCATTTCAGTGCCATTCTGTGCCTCTAACCATGTCCTGCACGTTGTCTGTGAATACCCCACTGTAATCTCTCTAGCCTGTGCTGATGTGACGGCCCAGTTAAATATCACCCTGTTGTTCGCCATGGGGGGTGTTTGGGGCccctttgtgtttgtgctgtggtCCTACAGCAGGATCATAATATCAGTggggaaaatgaaaactgtggaGAGCTGGAAGAAGGCCTTCTACATGTGCTTCTCCCACATAGTGGTAGTGGTGCTGTACTATGTCTCCTTGGCTGTGGTGTATATAGCGCTGAGAGTGGACAGCATTTCTCCCGGTGGGCGCATTTTCGTAGGTGGGCTTAACTACTTCCTCACCCCCCTTGTCAACCCCATCATCTACAGCTTAAGGAATGAGAAGATCAAGGAAGCAGCTCAGAGGTACTTTGCACTCAAGTCTGCCTTTCCACAGAGTACCATGAACACTGTCAGGgttactgaataa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84535 lncRNA upstream 221658 981839 ~ 1022813 (+) True G67690
TU84529 lncRNA upstream 439725 804537 ~ 804746 (+) True G67685
TU84528 lncRNA upstream 443007 801264 ~ 801464 (+) True G67684
TU84405 lncRNA upstream 924150 169904 ~ 320321 (+) True G67587
TU84399 lncRNA upstream 997469 147188 ~ 247002 (+) False AMCG00014061
TU84543 lncRNA downstream 4651 1250099 ~ 1250314 (+) True G67698
TU84544 lncRNA downstream 30543 1275991 ~ 1276216 (+) True G67699
TU84655 lncRNA downstream 575125 1820573 ~ 1821758 (+) True G67792
TU84650 lncRNA downstream 594717 1840165 ~ 1842445 (+) True G67789
TU84797 lncRNA downstream 831855 2077303 ~ 2077602 (+) True G67882
AMCG00014083 mRNA upstream 4 1234692 ~ 1244467 (+) True AMCG00014083
AMCG00014077 mRNA upstream 55935 1187559 ~ 1188536 (+) True AMCG00014077
AMCG00014071 mRNA upstream 858368 379210 ~ 386103 (+) True AMCG00014071
AMCG00014069 mRNA upstream 895296 279130 ~ 349175 (+) True AMCG00014069
AMCG00014068 mRNA upstream 986811 252275 ~ 257660 (+) True AMCG00014068
AMCG00014078 mRNA downstream 39482 1284930 ~ 1285907 (+) True AMCG00014078
AMCG00014085 mRNA downstream 59596 1305044 ~ 1306528 (+) True AMCG00014085
AMCG00014084 mRNA downstream 71025 1316473 ~ 1317459 (+) True AMCG00014084
AMCG00014087 mRNA downstream 72431 1317879 ~ 1333718 (+) True AMCG00014087
AMCG00014086 mRNA downstream 93608 1339056 ~ 1340036 (+) True AMCG00014086
TU84388 other upstream 1137349 58449 ~ 107122 (+) True G67577
TU84560 other downstream 238337 1483785 ~ 1484093 (+) False AMCG00014099
TU84663 other downstream 589984 1835432 ~ 1838125 (+) True AMCG00014104
TU84672 other downstream 633643 1879091 ~ 1881041 (+) True G67801
TU84682 other downstream 654772 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 881424 2126872 ~ 2130145 (+) True G67896

Expression Profile