RNA id: AMCG00014080


Basic Information

Item Value
RNA id AMCG00014080
length 978
RNA type mRNA
GC content 0.52
exon number 1
gene id AMCG00014080
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1231624 ~ 1232601 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCGACCCCAACACCTCCCTGCCCTTAGCCTCCGACTTCATCATTGTTGGAATGCCAGGCCTGCAGGAGCACTACACCACActcttcttcatcttcctcctccttttcCTGGCCACCTTCTTGGGGAACCTGCTCATACTGGTGTTGCTGTCCCTGGACCCCCGGCTCCACACACCCATGTACTTCTTCCTGTGGAACCTGGCTCTCCTGGATATGCTGCTGACAACCACCATCATACCCAAGCTGCTGGCGGTGCTGCTGGGGAACAACAGAATCTCCTTTGCAGGCTGCTTCCTGCAGATGTACTTTTACATTTCTATCAGTGCCACCGAAATGTTCCTAGTGGCAGCCATGGCTTACGACCGGTACGTGGCCGTGGTAAAGCCACTGCATTACAACTCCATCATCAACAGCAGGGTGTGTCTCACAATGATGTCCACAGTCTGGGCACTGGGGTTCCTCTCCCCTGTGGTGTCCGTGGCTCCGGCCAGCTCAGTGCCATTCTGTACCTCCAACAATATCCTGCACATTGTCTGTGAATACCCCTCTATAATGTCTCTAGCCTGCGCTGATGTGTCGGCCCAAGTGAATCTTACCCTGTTGATCGCCATGGTGGTTACATGGGGGGCTtttctgtttgtgctgtttACCTACTGCAGAATCATAATAGCGgtggtgaaaatgaaaactgtggaGAGCCGGAAGAAGGCCTTCTTCATGTGCTCCTCTCAcgtagtggtggtggtgctgtACTATGGCTCCACGGCTGTGGAATATATAGGGCTAAAGGTGGACAGCATTTCCCCCGATGGACGTATTTTCATCGGTGGGTTGAACTACTTCCTCACCCCCCTGGTCAACCCCATCATCTACAGCTTAAGGAATGAGAAGATCAAGGCAGCAGCTAAGAGGTACTTTAGACTCAAGTCTGCCTTTCTACGTTGTGTCAAGAACAGTGTCAGGGCTGCTGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84536 lncRNA downstream 133645 1097656 ~ 1097979 (-) True G67691
TU84530 lncRNA downstream 359997 871053 ~ 871627 (-) True G67686
TU84499 lncRNA downstream 729839 500007 ~ 501785 (-) True G67658
TU84487 lncRNA downstream 844683 386733 ~ 386941 (-) True G67646
TU84477 lncRNA downstream 885499 344414 ~ 346125 (-) True G67638
TU84597 lncRNA upstream 332186 1564787 ~ 1566340 (-) False AMCG00014098
TU84693 lncRNA upstream 588011 1820612 ~ 1821759 (-) False G67818
TU84694 lncRNA upstream 588011 1820612 ~ 1821759 (-) True G67818
TU84715 lncRNA upstream 646602 1879203 ~ 1882950 (-) False AMCG00014108
TU84744 lncRNA upstream 709426 1942027 ~ 1942420 (-) True G67849
AMCG00014081 mRNA downstream 18854 1210744 ~ 1212770 (-) True AMCG00014081
AMCG00014076 mRNA downstream 654546 567929 ~ 577078 (-) True AMCG00014076
AMCG00014072 mRNA downstream 668992 544467 ~ 562632 (-) True AMCG00014072
AMCG00014075 mRNA downstream 692164 534178 ~ 539460 (-) True AMCG00014075
AMCG00014073 mRNA downstream 702162 529163 ~ 529462 (-) True AMCG00014073
AMCG00014082 mRNA upstream 34641 1267242 ~ 1280397 (-) True AMCG00014082
AMCG00014091 mRNA upstream 158755 1391356 ~ 1412847 (-) True AMCG00014091
AMCG00014090 mRNA upstream 221174 1453775 ~ 1454617 (-) True AMCG00014090
AMCG00014097 mRNA upstream 304456 1537057 ~ 1538205 (-) True AMCG00014097
AMCG00014098 mRNA upstream 332177 1564778 ~ 1569929 (-) True AMCG00014098
TU84527 other downstream 440667 790528 ~ 790957 (-) True G67683
TU84434 other downstream 1060410 61992 ~ 171214 (-) False G67612
TU84686 other upstream 569061 1801662 ~ 1869448 (-) False G67813
TU84687 other upstream 574068 1806669 ~ 1869448 (-) False G67813
TU84705 other upstream 607564 1840165 ~ 1842445 (-) True G67825
TU84703 other upstream 626941 1859542 ~ 1863693 (-) True G67824
TU84685 other upstream 633793 1866394 ~ 1869448 (-) True G67813