RNA id: AMCG00014089


Basic Information

Item Value
RNA id AMCG00014089
length 1788
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00014089
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1412350 ~ 1433608 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGACCCCAACACCTCCCTTCCCTCAGCCTCCTATTTCATTATTGTGGGAATGCCAGGCCTGCAGGAGCACTACACCACACTCTTCTTCatgttcctcctcctcttcctggcCACCATTCTGGGGAACCTACTGATACTGGTACTGGTGTCTCTGGACCTCGGGCTCCACACACCCATGTACATCTTCCTGTGGAACCTGACTCTCCTGGATGTGCTGCTGACAACTGCCATGATACCCAAAGCTGCTGGCAGTGCTATGTACTTCATCATCTCATTTGCCACTGTAGAAATATTCCTCGTGGCAGCCATGGCTTATGACCGGTACGTGGCTGTGGTGAAGCCCCTGCATTACAACACCATCATCAGCACCAGGGTGTGCCTAAGGATGATGTCCACAATCTGGGCACTGGGCTTCCTCCTCCCTGTGGTGCCTGGGATCCTGGCCATTTCAATGCCATACTCTACCTCCAACTATGTCTTACATTGCTTCTGTGACTACCCCACTGCAATGTCTCTACCCTGTGCTGATGTGACAGCCCAGGTGAATTTTGCCCTGTTGATCGCCATGGTGGTTGACTGGGggccatttatttttgtgctgttTACCTACTGCAGGATTATAATAGCggtgatgaaaatgaaatccaaCGAGAGCTGTAAGAAAGCCTTCTACATGTGCTCCTCCCTCATAGTGCTGGTGGTGCTGTACTACGTCTCCTCGGCTGTGGTGTATATTGGGTTGAGAGTGGACAGCATTTCACCCATTGGTCGCATTTTCATCGGTGGGCTGAACTACTTCCTCACCCCCCTGGTAAATCCCATCATCTACAGCTTAAGGAATAAGAAGATAATGGCAGCAGCTCAGAGGTACATTataatcaaatgtttatttccaCACAGTGCCAAGAACACTTTCATCATTGTGGGAATGCCAGGCCTACAGGAGCACTACACCACActcttcttcatcttcctccttctcttcctGGCCACCATACTGGGGAACCTGCTGATCATAGTGCTGGTGTCCCTGGACCCCCGTCTCCACACACCCATGTACTTCTTCCTGTGTAACCTGGCTGTCCTGGATGTGCTGCTGACCATTACCATCACACCCAAGCTGCTGGCGGTACTGCTGGGGCACAACAGAATCTCCTTCACAGGCTGCCTTCTGCAGATGtacttttttaatgctttctgTGCCACTGAAGTTTTCCTTGTGGCGGCCATGGCTTACGACCGGTACGTGGCCGTGGTGATGCCACTGCATTATAACGGTATCATCAGCACCAGGTTGTGTCTCAGGATGATGGCCACAGCCTGGGCTGTGGGATTCCTCTCCCCCGTGCCATCTGTGGCCCTGGCCAGTTCAGTGCCATTCTGTACCTCCAACTATGTCTTACATTGTTTCTGTGACTACCCCACTGTAATGTCTCTAGCCTGTGCTGATGTGACGGTCCAGGTGAATTTTACCCTGTTGGTCGCCATGGTGGTTATCTGGGGgccttttctgtttgtgttgtggtcCTACTACAGGATCATAATATCGGTGGTGAAAATGAAATCCATGGAGAGCCGGAAGAAGGCCTTCTACATGTGCTCCTCCCACGTAGTGCTGGTGGTGCTGTACTATGTCTCCTCGGCTGTGGAGCACTACACCACACTCTTCTTCATCTTCCTGCTTCTCTTCCTGGCCACCATCCTGGGGAACCTGATGATCGTGGTGCTGGTGTCCCTGGACCCCCGGCTTCACACACCCATGAGGACCACAGTCGCTTCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84544 lncRNA upstream 136134 1275991 ~ 1276216 (+) True G67699
TU84543 lncRNA upstream 162036 1250099 ~ 1250314 (+) True G67698
TU84535 lncRNA upstream 389537 981839 ~ 1022813 (+) True G67690
TU84529 lncRNA upstream 607604 804537 ~ 804746 (+) True G67685
TU84528 lncRNA upstream 610886 801264 ~ 801464 (+) True G67684
TU84655 lncRNA downstream 386965 1820573 ~ 1821758 (+) True G67792
TU84650 lncRNA downstream 406557 1840165 ~ 1842445 (+) True G67789
TU84797 lncRNA downstream 643695 2077303 ~ 2077602 (+) True G67882
TU84819 lncRNA downstream 714841 2148449 ~ 2148654 (+) True G67899
TU84829 lncRNA downstream 899883 2333491 ~ 2333944 (+) True G67907
AMCG00014094 mRNA upstream 20412 1390961 ~ 1391938 (+) True AMCG00014094
AMCG00014093 mRNA upstream 29870 1381500 ~ 1382480 (+) True AMCG00014093
AMCG00014092 mRNA upstream 30860 1371192 ~ 1381490 (+) True AMCG00014092
AMCG00014088 mRNA upstream 57783 1353590 ~ 1354567 (+) True AMCG00014088
AMCG00014086 mRNA upstream 72314 1339056 ~ 1340036 (+) True AMCG00014086
AMCG00014099 mRNA downstream 46311 1479919 ~ 1497604 (+) True AMCG00014099
AMCG00014096 mRNA downstream 107802 1541410 ~ 1545225 (+) True AMCG00014096
AMCG00014095 mRNA downstream 111719 1545327 ~ 1564574 (+) True AMCG00014095
AMCG00014100 mRNA downstream 366074 1799682 ~ 1813298 (+) True AMCG00014100
AMCG00014101 mRNA downstream 392247 1825855 ~ 1833360 (+) True AMCG00014101
TU84388 other upstream 1305228 58449 ~ 107122 (+) True G67577
TU84560 other downstream 50177 1483785 ~ 1484093 (+) False AMCG00014099
TU84663 other downstream 401824 1835432 ~ 1838125 (+) True AMCG00014104
TU84672 other downstream 445483 1879091 ~ 1881041 (+) True G67801
TU84682 other downstream 466612 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 693264 2126872 ~ 2130145 (+) True G67896

Expression Profile