RNA id: AMCG00014095


Basic Information

Item Value
RNA id AMCG00014095
length 3645
RNA type mRNA
GC content 0.64
exon number 24
gene id AMCG00014095
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1545327 ~ 1564574 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCACAGCTCTGTCCAGCCGATAATCCGCGCAAAAGCACGAGCGGCGGCGCTGTTTAAAGGCTCCCGTCGTGCACTGCGCCACAGACTACACTACCCACAACCCCCTGCAGCAGCACAGAACACGTGGAGAAACTTTGCAACTGCTGAAGAGAAACCCGCACCTGAGACCCGCACCTGGGACCCGCAGCGCAGCTCCTCTCCGCTCTCCGACGCTGCAGACCGCGCCGCCACTCTCCACGGTGCCATGGCAGAGCGGGTGCTGGTGATTGGCAGCGGGGGCAGGGAGCACGCCCTGGCCTGGAAGCTGGCCCAGTCCCCCCTGGTCCAGCAGGTGCCCCTGGCTGCAGGCATGGTGGATGACCTCATGGCGGCGGGGGTGCGCAGTTTCGGGCCGTCGGCCAAGGCGGCTCAGCTGGAGGCCAGCAAGAGCTTCTCCAAGAGCTTCATGGATCGCCACGGCATCCCCACGGCGCGCTGGTGCAGCTTCACCGACGCCCAGGAGGCCTGCAGCTACATACAGGGGGCGGATTTCCCGGCGCTGGTGGTGAAGGCAAGCGGGCTGGCGGCGGGGAAGGGTGTGATCGTGGCAGCTGACCGGGAGCAGGCCTGCCAGGCGGTCAGGGATATCCTGCAGGACAAGGCATTCGGCTCGGCGGGGGAAACCGTGGTGgtggaggagctgctggagggagaggaggtgTCGtgtctgtgtttcagCGATGGCTCCACAGTGGCCCCAATGCCCCCTGCCCAGGACCATAAGCGGCTGCTGGATGGAGACCAGGGGCCCAACACGGGTGGCATGGGAGCATACTGCCCCACCCCTCAGgTGTcggaggagctgctgctgcaaGTCCGAGAGACTGTCCTGCAGAAGACCGTGGACGGGATGAGGCAGGAGGGGGCCCCGTATGTGGGAGTGCTGTATGCCGGGCTGATGTTGACCAAGGACGGGCCCAAGGTGCTGGAGTTTAACTGTCGCTTCGGAGACCCCGAGTGCCAGGTCCTGCTGCCCCTCCTCAAGAGCGACCTGTATGAAGTTCTTCAGGACACACTGCAGGGCAAACTGGCCACTAACCCCCCCGCCTGGCTCGACAAGAGTGCTGCAGTCACTGTGGTCGTGGCCAGTGAGGGCTATCCCGGGGAGTACAAGAAAGGTGTTGAGATCACAGGGCTGGCCCAGGCCAAGGAGCTGGACCTGCAGGTGTTCCACGCGGGGACGGCGCTGCGCGAGGGCCGGGTGGTGACCTGCGGCGGGCGCGTGCTTACCGTGACGGCTGTGCGGCCGGACCTGGAGAGCGCACTGCAGTGTGTCAACCGTGGCCTGGACGCCGTGAGCTTCCCTGGCGCCGTGTACCGCAGAGACATCGGCCACAGAGCCATCGCCTTCCTGCGCCAGCCCAGGGGTCTGACCTACAAGGACAGTGGAGTGGACATCGCGGCGGGCAATGTGCTGGTCGATCTCATCAAACCGCTGGCCAAAGCCACGGCCCGCAAAGGGTGCAATGCCGAGCTGGGGGGCTTCGCTGGGCTGTTCGACCTGAAGGCTGCAGGATTCAGCGACCCCATCCTGGTGTCTGGGACTGATGGAGTGGGCACCAAACTCAAGATCGCTCAGGCATGTGACCGGCACAGCTCACTGGGTCAAGACCTGGTGGCCATGTGTGTGAACGACGTGCTGGCGCAGGGGGCTGAGCCGCTCTTCTTCCTGGACTACTTCTCCTGTGGAAAGCTGGATGTGGGCGTGGCCTCCTCTGTGATTGGCGGGATCGCGGAGGCGTGTCGCATGGCTGGGTGTGCCTTGCTGGGGGGCGAGACGGCGGAGATGCCGGGGGTGTATGGCCCTGGCGAGTACGACCTGGCGGGGTTCTGCGTGGGCGCGGTGGAGCGAGGCCAGATGCTGCCTCGGCTCCAGGACATCGGAGAGGGTGACCTGCTCGTGGGCCTGGCCTCCTCCGGCGTGCACAGCAATGGCTTCAGCCTGGTGCGCCGGGTGCTGGATCTCTGCGGCCTGCAGTACGACTCCCCCGCCCCCTTCGGGAGCCTCGGGCAGACTGTGGGCGAGGTGCTGCTCACTCCCACCAAGATCTACAGCCAGCTGCTGCAGCCCGTCCTGCGCGGCGGCGCGGTGAAGGCCTATGCACACATCACTGGGGGCGGGCTGCTGGAGAACATCCCACGCGTGCTGCCCAAGGGGCTGGCCGTGGACCTGGACGCCTTGCTCTGGCGCATCCCGGCCGTGTTCTCGTGGCTCCAACGGGAGGGTGCTCTGTCGGAGGAGGAGATGGGCCGCACCTTCAACTGCGGGCTGGGCGCCGTGCTGGTGGTGGGGCGGCAGGAGGCCGAGCGGGTGCTGAAGGAGGTGCAGGGCCAGGAGGAGGCGTGGATCGTGGGCTCCCTCACGCGCAGGCAGCCAGGGGTGGAGCAGGTGGTGGTCAGGAATCTCCAGCGCTCCCTGCAGACGGGGCTGACCACCCCCCCGGACAGCAGCCTCGGGACGAACCTGCAGGCTCTGATCGAGCAGGCCAAGTCTCCCTCCAGCGCGGCCGAGATCGTCCTGGTCGTGTCCAACAGGCCCGGTGTGCTGGGGCTGAAGAGAGCAGCGCTGGCTGGCATCCAGACCAGGGTTGTGGACCACAAGCTGTACGGGAGCCGGGCCGAGTTCGACGGCACCGTCGACCGTGTGCTGGAGGAGTTCGGTGTGGAGGTCGTCTGCCTCGCCGGCTTCATGAGAATCCTCAGCGGTGCCCTGGTCAGGAAGTGGAACGGGAAGATGCTGAACGTACACCCCTCCCTTCTGCCCTCCTTCAAGGGGGTCCACGCCCACAGGCAGGCGCTGCAGGCTGGAGTGCGTATCACCGGCTGCACCGTGCACTTCGTGGCGGAGGAGGTGGATGCCGGAGCCATCATCGTGCAGGAGGCGGTGCCCGTGCTGGAGAGTGACACGGAGGAGAGCCTATCGGAGCGCGTGAAGGAGGCAGAGCACCGGGCCTTCCCTGCCGCCATGGAGCTGGTGGCCAGCGGGGCCGTGTGCCTCGGGGACGACAACCGCATCGTGTGGAGCCACACCCAGCTGCACTAACCCCTCCCCCGCCACCCGACCCCACAGCCCTGTCCCCGAACAACCGCCGCAGCACCCGGCTGTGCCAGCTCCCCCTTCCTGATTAAAATCCTTCTCTCTTAGCGTGGCATCCTTCCCCCTGGAGCAGAGGCACAGAGGTGGCCAGGACCGGTAGGAGCTCCAGGGAATAGACTTCCCGTATTAGTCTCAACCCTTTAATGTTTTGGAAAGTAGAGCCAGTCTAGCAGTGTCTTACATCACACAGGTGGGAATCCAGGaagagagatgggagagagaggtgggtTTCTGTAGCTGCAGCTGTGCTTCAGGGACAGGACTGTTCATGTGCTGTCCAATGAATTACACGTACAGAATTCACACGTGTGGGCAGGGCAGGAGAAGCCTTGTATTGATGATTGTCACATGCATGGTTGTGGTATTGTGGGAATGTGTccacgagagagagagcgcctGTAAAGCCTGCTACTAAAGGAGACTGTTGTTCTTTACTGCTCAATGGTGAAATATCTCTTGCTGCCCTGTGTCTTGATTTGTGTCGTTTACATTAAACTCACTGGG

Function

GO:

id name namespace
GO:0009113 purine nucleobase biosynthetic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004637 phosphoribosylamine-glycine ligase activity molecular_function
GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity molecular_function
GO:0004644 phosphoribosylglycinamide formyltransferase activity molecular_function

KEGG:

id description
K11787 GART; phosphoribosylamine--glycine ligase / phosphoribosylglycinamide formyltransferase / phosphoribosylformylglycinamidine cyclo-ligase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84544 lncRNA upstream 269111 1275991 ~ 1276216 (+) True G67699
TU84543 lncRNA upstream 295013 1250099 ~ 1250314 (+) True G67698
TU84535 lncRNA upstream 522514 981839 ~ 1022813 (+) True G67690
TU84529 lncRNA upstream 740581 804537 ~ 804746 (+) True G67685
TU84528 lncRNA upstream 743863 801264 ~ 801464 (+) True G67684
TU84655 lncRNA downstream 255999 1820573 ~ 1821758 (+) True G67792
TU84650 lncRNA downstream 275591 1840165 ~ 1842445 (+) True G67789
TU84797 lncRNA downstream 512729 2077303 ~ 2077602 (+) True G67882
TU84819 lncRNA downstream 583875 2148449 ~ 2148654 (+) True G67899
TU84829 lncRNA downstream 768917 2333491 ~ 2333944 (+) True G67907
AMCG00014096 mRNA upstream 102 1541410 ~ 1545225 (+) True AMCG00014096
AMCG00014099 mRNA upstream 47723 1479919 ~ 1497604 (+) True AMCG00014099
AMCG00014089 mRNA upstream 111719 1412350 ~ 1433608 (+) True AMCG00014089
AMCG00014094 mRNA upstream 153389 1390961 ~ 1391938 (+) True AMCG00014094
AMCG00014093 mRNA upstream 162847 1381500 ~ 1382480 (+) True AMCG00014093
AMCG00014100 mRNA downstream 235108 1799682 ~ 1813298 (+) True AMCG00014100
AMCG00014101 mRNA downstream 261281 1825855 ~ 1833360 (+) True AMCG00014101
AMCG00014104 mRNA downstream 271256 1835830 ~ 1838007 (+) False AMCG00014104
AMCG00014102 mRNA downstream 294104 1858678 ~ 1869442 (+) True AMCG00014102
AMCG00014103 mRNA downstream 308175 1872749 ~ 1878960 (+) True AMCG00014103
TU84560 other upstream 61234 1483785 ~ 1484093 (+) False AMCG00014099
TU84388 other upstream 1438205 58449 ~ 107122 (+) True G67577
TU84663 other downstream 270858 1835432 ~ 1838125 (+) True AMCG00014104
TU84672 other downstream 314517 1879091 ~ 1881041 (+) True G67801
TU84682 other downstream 335646 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 562298 2126872 ~ 2130145 (+) True G67896
TU84895 other downstream 1142266 2706840 ~ 2710329 (+) False AMCG00014146

Expression Profile