RNA id: AMCG00014099


Basic Information

Item Value
RNA id AMCG00014099
length 4242
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00014099
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1479919 ~ 1497604 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCGACCCCAACACCTCCCTGCCCTCAGCCTCCTATTTCATCATTGTGGGAGTGCCAGGCCTGCAGGAGCACTACACCACActcttcctcatcctcctcctcttcttcctgaCCACCATCCTGGGGAACCTGCTGATCCTGGTGCTGCTGTCCCTGGACCCCCGGCTCCACACACCCATGTACTTCTTCCTGTGGAACCTGGCTCTCCTGGATATGCTGCTGACTGTTATTGTCACACCCAagctgctggctgtgctgctgggctACAACAGGATCTCCTTCACTGGCTGTTTCCTGCAGATgtactttttcatttcagtcagTGCCACTGAAGTTTTCCTCGTGGCGGCCATGGCTTACGACCGGTATGTGGCCGTGGTGAAGCCGCTGCATTATAACTCTATCATCAGCACCAGAGTGTGCCTCACAATGACGACCACAGTCTGGGTGCTGGGCTTCCTCCTCCCCGTGTTGTCTGTGGTCCTGGCCAGTTCAGTGCCATTCTGTGCCTCCATCCATATCCTGCACGTTCTCTGTGAATACCCCTCTGTAATGACTCTGGCCTGCTCTGATGTGACGGCCCAGGTGACTTTTGCCATGTTACTTGTCAATATGGGTTCCTGGGGTccctttgtgtttgtgctgtttacCTACGGCAGGATCATAATATCGGTGGTGAAAATGAAAACGGTGGAGAGCCGGAAGAAGGCCTTCTTCATGTGCTCCTCCCACATAGTGGTGGTGATGCTGTACTACATCACCACAGCCATGGTATATATAGCGCTGAGAGTGGACAGCATCTCCCCAGATGGGCGTGTTTTAATTGGTGGGCTTTACTACTTCCTCACCCCCCTGGTCAACCCCATCATCTACAGCTTAAGGAATGAGAAGATCAAGGCAGCAGCTCAGAGGTACTTTGGACTCAAGTCTGCCTTTCCACATGGTGCCAAGAACAGTCTGCTGGCGGTACTGCTGGGCTACAACAGGATCTCATTCACAGGCTGCTTCATGcagatgtatttttacatttctttctgtgCCACTGAAGTTTTCGTCGTGGCGGCCATGGCTTACGACCGGTATGTGGCCGTGGTAAAGCCGCTGCATTATAACTCTATCATCAGCACCAGGTTGTGCTTCACGATGACGACCACAGTCTGGGCAGTGGGCTTCCTTGTCCCCTTGGTATCTGTGGTCCTGGCCAGTTTACTGCCATTCTGTACCTCCAATTATGTCTTACATTGTTTCTGTGACTACCCCACTGTAATGTCTCTAGCCTGTGCTGATGTGACGGCCCAGGTGAATTTAGCCCTGTTGATCGCCATGATGGGTGTCTGGGGGCCCTTTCTGTTTGTATTGTGGTCCTACTACAGGATCATAATATCGgtggtgaaaatgaaaactgtggaGAGCCGGAAGAAGGCCTTCTACATGTGCTCCTCCCatgtagtggtggtggtgctgcACTTCGTCTCCCAGGCTGTGGTGTATATAGGGCTGAGAGTGGAGAGCATTTCCCCCATTGGACGCATTTTCATAGGTGCGCTACACTACTTTCTCACCCCCCTGGTCAACCCCATCATCTACAGCTTAAGGAATGAGAAGATCAAGGCAGCAGCTCAGAGGTACTTTGGACTCAAGTTTGTCTTTCCACACACTGCCAAGAACACTATgtactttttcatttcagtcacTGCCACTGAAGTTTTCCTTGTGGCGGCCATGGCTTACGACCGGTACATGGCTGTGGTGAAGCCACTGCATTATAACACCATCATCAGCACCAGGGTGTGCCTCACGATGACGACCACAGTCTGGGCACTGGGTTTCCTTGTCCCCCTGGTGTCTCTGGTCCTGGCCAGTTCAGTGCCATTCTGTACCTCCAACTATGTCTTACATTGTTTCTGTGACTACCCCTCTGTAATGTCTCTAGCCTGTGCTGATGTGACGGCCCAGGTGAATTTTGCCCTGTTGCTTGTCATGATAGGTGTCTGGGGGCCCTTTCTGTTTGTATTGTGGTCCTACTACAGGATCATAATATCGgtggtgaaaatgaaaactgtggaGAGCCGGAAGAAGGCCTTCTCCATGTGCTCCTCCCatgtagtggtggtggtgctgcACTACGTCTCCCGGGCTGTGGTGTATATAGGGCTGAGAGTGGACAGCATTTCCCCCATTGGACGCATTTTCATCGGTGCGCTGTACTACTTCCTCACCCCCCTGGTCAACCCCATCATCTACAGCTTAAGGAATGAGAAGATCAAGGCAGCAGCTCAGAGGTACTTTGGACTCAAGTTTGTCTTTCCACACACTGCCAAGAACACTTTCATCATTGTGGGAGTGCCAGGCCTCCAGGAGCTCTACACCATActcttcttcatcttcctcttcctcttcctggcCACCATCCTGGGGAACCTGCTGATCGTGGTGCTGGTGTCCAGGGACCCCCGGCTTCACACACCAATGTACTTCTTCCTGTGGAACCTGGCTATCGCGGATATGCTGCTGACCATTACCATCACACCCAAACTGCTCGCGGTGCTGCTGGGCCACAACAGGATCTCCTTCACAGGCTGTTTTCTGCAGAtgtactttttcatttctttctgtgCCACTGAAGTATTCCTTGTGGCGGCCATGGCTTACGACCGGTACGTGGCCGTGGTGAAGCCACTGCATTATAAGTCTATCATCAGCACAAGGGTGTGCCTCACGATGATGGCCACAGTCTGGGTGCTGGGCTTCCTTGTCCCCTTGGTATCTGTGGCCCTGGCCAGTTCAGTGATATTCTGTACCTCCAACTATGTCTTACACTGTTTCTGTGACTACCCCACTGTAATGTCTCTAGCCTGTGCTGATGTGACAGCCCAGGTGAATTTTGCCCTGTTTCTCGCCATGTTGGTTGTCTGTGGGccctttctgtttgtgttgtggtctTACTGCAAGATCATAATATCAGTGGTGAAAATGAAATCCATGGAGAGCCGGAAGAAGGCCTTCTACATGTGCTCCTCCCACGTAGTGGTGGTGGTCCTATACTATGTCTCCACGGCTGTAGTGTATATAGGACTGAGAGTGCAGAGCATTTCCCCCATTGGACGCATTTTCATCGGTGCGCTGTACTATTTCCTCACTCCCATGGTCAACCCCATCATCTACAGCTTAAGGAATGAGAAAATCAAGGCGGCAGCTCAGAGGTACTTTGGACTCAAGTCTGCCTTTCCACACACTGCCAAGAACACTACCCTGTGTGTCATGAGTGACCCCAACACCTCCCTGCCCTCAGCCTCCTATTTCATCATCGTGGGAATGCCAGGCCTGCAGGAGCACTACACCACACTCTTCCCCATCTTCCTGCTCCTCTTCCTGGCCACCATTCTGGGGAACCTGCTGATTGTGGTGTTGCTGTCCCTGGACCCCCGGCTTCACACACCCATGTACTTCTTCCTGTGTAACCTGGCTCTCCTGGATATGCTGCTGACCATTACCATCATGCCCAAGTTGCTGGCAGTGCTGTGGGGAAATAACAGGATCTCCTTCACTGGCTGCTTCCTGCAGATgtactttttcatttcaatcagTGCCACTGAAGTTTTCCTCGTGGCGGCCATGGCTTACGACCGGTATGTGGCCGTCGTGAAGCCGCTGCATTACAACTCTGTCATCAGCACCAGGGTGTGCCTCATGATGATGTCCACAGTCTGGGTGCTGGGCTTCCTCCTCCCTGTGGTGTCTGTGGCCCTGGCCAGTTCAGTGCCATTCTGTAGCTCCAACCATGTCCTGCATGTTGTCTGTGACTACCCCACTATAATGTCTCTAGCCTGTGCTGATGTGACGGCCCAGGTGAATTTAGCTCTGTTGATTGTCATGATAGGTGCCTGGGGACCCtttgtatttgtgctgtttACCTACTGCAGGATCATAATAGCGgtggtgaaaatgaaaactgtggaGAGCCGGAAGAAGGCCTTCTACATGTGCTCCTCCCACatagtggtggtggtgctgtACTACGTCTCCACGGCTGTGGTGTATATAGGGCTGAGAGTGGACAGCATTTCCCCCGATGGGCGTGTTTTCATTGGGGGGCTGAACTACTTTCTCACCCCCCTGGTCAACCCCATCATCTACAGCTTAAGGAATGAGAAGATCAAGGCAGCAGCTCAGAGGTACTTTGGATTCAAGTTTGTCTTTCCACAGGGTGCCAAGAACACTGTCAGGGCTGCCGAATAA

Function

GO: NA

KEGG:

id description
K04257 OLFR; olfactory receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84544 lncRNA upstream 203703 1275991 ~ 1276216 (+) True G67699
TU84543 lncRNA upstream 229605 1250099 ~ 1250314 (+) True G67698
TU84535 lncRNA upstream 457106 981839 ~ 1022813 (+) True G67690
TU84529 lncRNA upstream 675173 804537 ~ 804746 (+) True G67685
TU84528 lncRNA upstream 678455 801264 ~ 801464 (+) True G67684
TU84655 lncRNA downstream 322969 1820573 ~ 1821758 (+) True G67792
TU84650 lncRNA downstream 342561 1840165 ~ 1842445 (+) True G67789
TU84797 lncRNA downstream 579699 2077303 ~ 2077602 (+) True G67882
TU84819 lncRNA downstream 650845 2148449 ~ 2148654 (+) True G67899
TU84829 lncRNA downstream 835887 2333491 ~ 2333944 (+) True G67907
AMCG00014089 mRNA upstream 46311 1412350 ~ 1433608 (+) True AMCG00014089
AMCG00014094 mRNA upstream 87981 1390961 ~ 1391938 (+) True AMCG00014094
AMCG00014093 mRNA upstream 97439 1381500 ~ 1382480 (+) True AMCG00014093
AMCG00014092 mRNA upstream 98429 1371192 ~ 1381490 (+) True AMCG00014092
AMCG00014088 mRNA upstream 125352 1353590 ~ 1354567 (+) True AMCG00014088
AMCG00014096 mRNA downstream 43806 1541410 ~ 1545225 (+) True AMCG00014096
AMCG00014095 mRNA downstream 47723 1545327 ~ 1564574 (+) True AMCG00014095
AMCG00014100 mRNA downstream 302078 1799682 ~ 1813298 (+) True AMCG00014100
AMCG00014101 mRNA downstream 328251 1825855 ~ 1833360 (+) True AMCG00014101
AMCG00014104 mRNA downstream 338226 1835830 ~ 1838007 (+) False AMCG00014104
TU84388 other upstream 1372797 58449 ~ 107122 (+) True G67577
TU84663 other downstream 337828 1835432 ~ 1838125 (+) True AMCG00014104
TU84672 other downstream 381487 1879091 ~ 1881041 (+) True G67801
TU84682 other downstream 402616 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 629268 2126872 ~ 2130145 (+) True G67896
TU84895 other downstream 1209236 2706840 ~ 2710329 (+) False AMCG00014146

Expression Profile