RNA id: AMCG00014100


Basic Information

Item Value
RNA id AMCG00014100
length 3849
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00014100
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1799682 ~ 1813298 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCTCTGCTCTCTCCCTGCTCGGGACCGGGATCCTCTGCAGCGCTCGCCTCGGCTTTGATTTATACAGACAAGACCGCAgagccggagagagagagggagggagagagagagggagagagagagggagggagagagcgagggggCAGGACTTTTTTTCTCTAGTGCTTTTAAGTGGaaactttgtgttttgtttgaaaagttCAGTGCAGCCCCTGcctgctctctgtctctttctccgtcttctctctctttctccctctcggtttcttttctgtctccaatgtctttgttttttcgtctttttatacttttccgAGGGAGTCTAAGTATCAAGAGGCAATGTGCGACCAAACCAGACCTGCTTCATATAATTTTCTaagttatttttctaaattattggtattattaataataaagatattcATCCTATTTTGATCGAGGGTCAATATTGCAGCACAGTATTTATATGCACCGCCGGTTCCTGTGGGCACTGAAGATGACATCCCTCTGTTGCGTTTTCTCGGCCAGAGAGAGCATGCTGCTGTTCAAGTTTCTGCTGCTCTGCGCCCTGGAGATCCGCTCGGACGCCACCAACTCCAGCCTGGCAGCGGGCACCGCTTCTCCACCTGCCGCCGAGCTGCCCCCCCATGGGCGGGCACACAGTCAGAGGAGGAGGCATGGCGTGGTGCAAAACATCGACCAGATCTACCACGGTGGTGGCAAGATCGGCTTCATCCTTTACGCGGACGGGAAGAGGTTCTTGTTGGATATGGAGAGGGACGAGTCCCTGCTGTCCCCGCACTTCAGCGCGCAGTATCAGGACGCGCTGCGGGGGGCCAGCGGGCACCGGGCGCCACCGCACAAGGAGTGCGTTTACCGTGGCACCGTGGACTCGCGGCCCGAGTCGCTGGCTCTGTTCAACCTGTGCGGGGGCATGGAGGGCTTCTTCGCTGTGAAACACGCCCGGTACACCATCAGACCCCTGCTCAGGGCCAAGGGACATGAGGACGAGGTGTACCGGGCAGAGGCGGGCAGGGACCGGGCACTGCACCTCTACACCCGGGAGAGCTTCCTCTTTGAAGCCCTGCCCGGGCGGGAGAGCTGTGGCACCAGGGGCGGTGCGAGGACGCATAACAGGGCTGCGGAGAGAGCGGGTCGCTGGGGTCAAGCTCGGGTTCATGGGCACGAAGAGAGGACAGGCAGCGAGGAGCAGCAGTGGGGGCTCCCCCAGGTGGTGCCCCACAGCCCCCCGGGGCGCCAGAGGTCTCGCCGCTCGGTGTCCCGGGCCAGGCATGtggagctgctgctggtggCGGACGAGTCCATGTCCAAGAAGTACGGCAAGGACCTGCAGCACTACCTGCTCACGCTGGCCTCCATCGCCTCCAAGCTGTACGGGCACGCCAGCATCGAGAACCCCATCCGGCTGTCCGTGGTCAAGGTGGTCGTGGTGACGGACAAGGAGAAGGGGCTGGAGGTCAGCAAGAACGCCGCCGCCACCCTGAAGAGCTTCTGCAAGTGGCAGAACCAGCAGAACAAGCTGGATGACGACCACCAGCAGCACCACGACGCAGCCATCCTGTTCACCCAGCAGGACCTGTGCGGACACCACTCCTGCGACACGCTGGGCATGGCTGACGTGGGCACCATCTGCTCGCCCGAGAGGAGCTGCGCCATCATCGAGGACGACGGGCTGCACGCCGCCTTCACCGTGGCCCACGAGATCGGTCACCTGCTGGGTCTCTCCCACGACGACTCCAAGTTCTGCGAGGAGAACTTCAGCTCCAGCGAGGACAAGAGGCTCATGTCCTCCATCCTGACCAGCATCGACGCCTCCAAGCCCTGGAGCCGCTGTACATCAGCCACCATCACCGACTTCTTTGACGACGGCAATgCGGAGTGTCTCCTGGACCTCCCGCGGCAGCCCATCCTGGGGCCCGAGGAGCTGCCGGGCCAGAGCTACGATGCCATCCGGCAGTGCAAGCTGGCGTTCGGGCCGGAGTACACCATGTGCCCTGGGATGGACGTGTGTGCCCGGCTGTGGTGCGCCGTGATCCGCCAGGGCCAGATGGTGTGCCTCACCAAGAAGCTGCCGGCAGTGGAGGGGACTCCCTGTGGGAAGGGCCGCATCTGTCTGCACGGCAAGTGTGTGGACAAGACGCGCAAGAAGCACTACTCGgcctcCAATCATGGCAGCTGGAGCTCCTGGGGCTCGTGGGGGCAGTGCTCCCGGACGTGTGGGGGGGGCGTGCAGTTCGCTGAGCGCCAGTGCAACAACCCCCCCCCGCGCAACAACGGCCGCTTCTGCACTGGCAAGAGAGCCATCTACCGCTCCTGCAGCGtcaccccctgccccccccacagtaagAGTTTCCGTCAGGAGCAGTGTGAAGCCCGTAACGGGTACCAGACCGACCCGAAGGGGGTGAAGACGTTTGTGGAGTGGGGGCCCAAGTACGCGGGGGTGCTGCCAGCAGACGTGTGCAAGCTGACCTGCCGAGCCAAGGGCACGGGCTACTACGTGGTGTTCGCACAGAGGGTGATCGATGGGACAGAGTGTCGTCCCCACAGTAACTCTGTGTGCGTGCGGGGGAAGTGCATCCGGACAGGCTGCGACGGGATCATCGGCTCCAAGCTGCAGTTTGACAAGTGCGGCGTGTGTGGGGGGGACAGCACCAGCTGCGTCCGGGTGATCGGCAACTTCACTAAGAGGAGtAAGGGCTACACGGACGTGGTGAAGATCCCCGAGGGTGCCACACACATCAAGGTCCGGCAGCACAAGCCCCGGGATGAGACGCGCTACACAGCCTACCTGGCGCTGCGCCGCCCGGGGGGCGAGTACCTGCTGAACGGCAAGTTCATGATCTCCACATCCGAGACCATCATCCCTCTGAACGGCACCGTGCTCAACTACAGCGGCTGGAGCCAGCGGGATGACTACCTGCACAGCATGGGCCCGGGGGCGCTGCGCGACGCGCTCACCGTGCAGATCCTGGCCACCGACGCGCACCAGCCCCTGGACGTGCGCTACAGCTTCTTTGTGCCCAAGAAGGTGGCGCAGTCCTCGCCCGCGCCCGCGCCCACACACGCACCCGCGCCCAAGTCCCCGCAGTGGGTGGCCGGACCCTGGCACGCCTGCTCCCGGAGCTGCGACGCGGGCTGGCAGACGcgcacagtgcagtgcagggacGGGCAGGGCCGGCTGGCAAAGGGATGCCCACTGCCCAGCCGGCCCTCCGCCTTCAAACACTGCCAGCTCAAGAAGTGCTGaggactgagacacacacacacacctggactCGCTTTTGTACTATACAGTTACTATTGTTATTAcagatattattataattgttattgtaattattaacaattattgtcattatgattattattatgaatgtctgttgttttgttgttacgaTGTGAATGTGTTGTGTCGGCGTCCTGTCCACCCACCTGCCTGCTGCCCAGCCCCGCTCCACACACCGCGCCCCACGCTGGGTCTCAACCGGGGCTCAGATGTCACACTTGACTTTTTCGTTTTGGAAGCCAAGCTGCTGATGAAGGACTGAGCCGTCCCTGGCTGTGTGGGAGTCATGAATGTGTCCCTCGGCGCAGAGACAGACACGGGCTGGTGGGCTCAGGTGAGAGGTGAGAGGTGAGAGGAGCAGGTGGGCACACGAGGGCGACACCCTGGAGACAGCGAGGACGTGGCACTCACCGGTCCAAATCAAGAGGGGCTGACCTGCTCCCCGTGCACTGGGACAGCGCAGTGtgtgccccccgccccccaacaGATAGGGGTCTGGACGCTCTGTTCACTGAGAGGCTCCTGCCTCCTCGTGTT

Function

GO: NA

KEGG:

id description
K08620 ADAMTS5; a disintegrin and metalloproteinase with thrombospondin motifs 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84544 lncRNA upstream 523466 1275991 ~ 1276216 (+) True G67699
TU84543 lncRNA upstream 549368 1250099 ~ 1250314 (+) True G67698
TU84535 lncRNA upstream 776869 981839 ~ 1022813 (+) True G67690
TU84529 lncRNA upstream 994936 804537 ~ 804746 (+) True G67685
TU84528 lncRNA upstream 998218 801264 ~ 801464 (+) True G67684
TU84655 lncRNA downstream 7275 1820573 ~ 1821758 (+) True G67792
TU84650 lncRNA downstream 26867 1840165 ~ 1842445 (+) True G67789
TU84797 lncRNA downstream 264005 2077303 ~ 2077602 (+) True G67882
TU84819 lncRNA downstream 335151 2148449 ~ 2148654 (+) True G67899
TU84829 lncRNA downstream 520193 2333491 ~ 2333944 (+) True G67907
AMCG00014095 mRNA upstream 235108 1545327 ~ 1564574 (+) True AMCG00014095
AMCG00014096 mRNA upstream 254457 1541410 ~ 1545225 (+) True AMCG00014096
AMCG00014099 mRNA upstream 302078 1479919 ~ 1497604 (+) True AMCG00014099
AMCG00014089 mRNA upstream 366074 1412350 ~ 1433608 (+) True AMCG00014089
AMCG00014094 mRNA upstream 407744 1390961 ~ 1391938 (+) True AMCG00014094
AMCG00014101 mRNA downstream 12557 1825855 ~ 1833360 (+) True AMCG00014101
AMCG00014104 mRNA downstream 22532 1835830 ~ 1838007 (+) False AMCG00014104
AMCG00014102 mRNA downstream 45380 1858678 ~ 1869442 (+) True AMCG00014102
AMCG00014103 mRNA downstream 59451 1872749 ~ 1878960 (+) True AMCG00014103
AMCG00014111 mRNA downstream 87164 1900462 ~ 1902687 (+) False AMCG00014111
TU84560 other upstream 315589 1483785 ~ 1484093 (+) False AMCG00014099
TU84388 other upstream 1692560 58449 ~ 107122 (+) True G67577
TU84663 other downstream 22134 1835432 ~ 1838125 (+) True AMCG00014104
TU84672 other downstream 65793 1879091 ~ 1881041 (+) True G67801
TU84682 other downstream 86922 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 313574 2126872 ~ 2130145 (+) True G67896
TU84895 other downstream 893542 2706840 ~ 2710329 (+) False AMCG00014146

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001482 True 2814 mRNA 0.58 8 NC_007112.7 691738 ~ 714626 (-)