RNA id: AMCG00014101


Basic Information

Item Value
RNA id AMCG00014101
length 5019
RNA type mRNA
GC content 0.61
exon number 10
gene id AMCG00014101
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1825855 ~ 1833360 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaagttttcccaGCCAAAAGCGCCCCTCTCTGCAATGATTGATTGTTATGGCGCCGCTCCAGAGCTGGTTTTTTTAAGTGCGTTTTGGTTGCGCACGAAGTTTCTCTTGGATCAAAGGGTCTGCAGGAAGGGGGCGGGCGGCGCGGCGCATATAAGCCGCCCGGGACAGCGAGCTGAAGGGAccggagacagagagacagagagacactgcGCCTCTTCACTTTTATATCCAAGTTGCTGGTTGACTTTTTATTCAGCTGGAAGAAACGTTTTCTGCAACGTTACTGATTCGTCTTATTGAACAGAAGCGAGTCTGCACAGGTCAGGTCCCCGCTGCACTGCCGCAGGAGCGCACCGGATTGCGGTCTTGCTGCCGTGTGTTCAGCTCTGCGGGAGGATGCGCTCTGTGCTGCCGGCCGCGCTGGCTCTGCTGGGCGCTCTGTGCGTAATCGCGGCGCGCAGCCCCTGGCAGGAGGGCACCGTGGAGCCGCTGCGGCTGGACAAGGGTCCGCCGACAGGGACCGCCAGCCCggaggagcaggagaaggaAGCGGAGAAACGGGTCTACGAGCTGGACGCCTTTGGCGAGCGGTTGATCTTGGACTTAGAGCCCGACCAGACGTTCCTGGCTCCGGCATTCACATTCCAGGTGCTGGGGAGGCCGGGGTCGCCCGTGTCGGAGCAGCGGGGAGACTCTGACCGCGCCGCCCTGGCTCGGTGCTTTTACTCCGGCTCTGTCAACGGAGACCCCGGCTCTGCGGCGGCGCTCAACCTCTGCGGCGGGCTGCACGGCGGCTTCTACCTCGGTGCGGACGAGTACTACATCCAGCCCCGCAACGGCAGCTCGGAGGACCGCCAGCCGCACCTCCTCCGCCACAGGAGCCGGGCGCCGCCGGCCGAGGAGGGAGCCTCCAAGTGCGGGGTGAacgaggaggaggagcgggTCCCGGAGAGCCCGGAGCGGCGGGAGGGACAGCAGGGCGAGGCGGCGGCGCGGCGCACAGCTCCCCTCAGGGCCCGGCGGTTCGCGTCCACCCCGCGCTTCGTGGAGACGCTGCTGGTGGCAGATCGCTCCATGGCGGACTTCCACGGCGCCGGGCTGCGGCCCTACCTGCTCACGGTGATGGCGGTTGCGGCCCGGCTGTACCGGCACCCCACCATCCGCAACCCCATCAGCCTGGCCGTGGTGAAGCTGCTGGTGGTGCAGGACGAGGAAGGGGGCCCCGCCGTGTCCACCAACGCCGCCCTCACCCTGCGCAACTTTTGCCAGTGGCAACGGCAGCACAACCCCACCAGCGACCGTCACCCCGAGCACTACGACACGGCCGTGCTCTTCACCAGACAGGACCTGTGTGGCTCCCACTCCTGCGACACGCTGGGCATGGCGGACGTGGGCACCATGTGTGACCCCGAGAGGAGCTGCTCTGTGATCGAGGACGATGGGCTGCAGGCCGCCTTCACCGTGGCCCACGAGCTGGGCCACGTGTTCAACATGCCTCACGACGATGCCAAGCACTGTGCCGGCGTCAACGGCATCCACTGGAGCTCCCACATGATGGCATCCACACTGTCCAACCTCAACCAGCTGCAGCCCTGGTCTCCCTGCAGTGCCCTCATggtcacctccttcctggacgGCGGTCATGGCCAGTGCCTTCTGGACAAGCCGCAGAAGCCCCAGCCGCTGCCCAAGACCCTGCCAGGCTCAGTGTACGACGCCCACCGGCAGTGCCAGCTGACCTTCGGCCCAGAGTCGCGGCACTGCCCGGACATCAGCACCACCTGCTCCGCCCTGTGGTGCACCATGACAGCCGCCGGGGGGCTGTTGGTCTGCCAGACCAAGAACTTCCCCTGGGCGGACGGCACACCCTGCGGCCCGGAGAGCCACTGCCTCGCCGGCCAGTGTCTGACCAAGAGCCAAGCCGCCCTGCACCAGATCCCTGTGAACGGCGGCTGGGGCGCGTGGGGCCCGTGGGGCGACTGCTCGCGGACCTgcggggggggggtgcagtACTCCTACCGCGACTGCGATAACCCCCAGCCCAAGAACGGCGGCAAGTACTGCGAGGGCAAGAGAATCCAGTACCGCTCCTGCAGCATCCAGACCTGCCCCGACAACAACGGTCTGTCCTTCCGGGAGGAGCAGTGCCTGGCCCACAACGAGCTCTCCTCGCAGGTGTCGTTTGGTCCCGGCCCGGCGGTGGAGTGGGTGCCCAAGTACGCCGGGGTTTCGCCCAAGGACCGCTGCAAGCTGGTGGAAGACGGCACGCCCTGCAGCCCAGACTCCACCTCGGTGTGCGTGCAGGGCCAGTGTGTCAAGGCCGGCTGTGACCGCGTCATCGGCTCCAGCAAGAAGTTCGACAAGTGCGGCGTGTGCGGGGGGGACAGCTCCACCTGCAAGAAGGTCACGGGGTCGCTGGACCGTGCAAGGCCGGGCTATCAGGACGTGGTGACCATCCCTGCCGGCGCCACACACATCGACATCAAGCAGCGGGCGCCGGGCGGCTCCCAGCAAGACAACAGCTACCTGGCGCTGCGCGGGGTAGGGGGTGCCTACCTGCTGAACGGCGAGTACACGCTGACCACGCTGGAGACGGACGTGTCCCTGCGCGGTGCCCTGCTGCGCTACAGCGGCTCCTCCGCCGCCCTGGAGCGCATCCGCAGCTTCGGCCCCCTGCCTGAGCCCCTCACGGTGCAGGTGCTGTCGGTGGGCAGTGCCCCGCGGCCGCGGGTCAAGTACAGCTACTTCGCCCCCCGGCCCGCCCCGGCGCGCCCCGCCGTGTCCTTCAACGCCATCCAGGAGACAGCCGCGGCCGACTGGGTGCTGCGGGAGTGGGGGCCCTGCTCCCGGAGCTGCGGAGGGGGCCAGCGCCTGGTGGAGTGCCTGGACCCCCGCGGCCGCCCCTCCACCGACTGCGCCCCCGAGCTGCAGCCGCCCGGCTCCCGCCGCTGCGCGCCCGCCGCCTGCCCGCAGTGGCTGCTGGGAGACTGGTCGTCCTGCTCCAAGAGCTGCGGCCGCGGCTTCCGCAAGCGCCTGCTGCGGTGCGTGAGCGAGGAGGGCCGGGTGCTGCCCCAGGACAGCTGCCCCCCCGCGGAGAAGCCCCGCCCCCTGCTCGACCTCTGCAACCTGGCCGCCTGCCActagagacagacagggagagagactgagagactgagagatggagagagatggagacccGCAGCGTGGCTCTGCTGCAGCGCTCCTCAGAGAGCATCGCCCCACTGCCCAACGCACCCACGCCGTCTCTGGGCTTCTTCTTGCCAccggtttttatttttgctcctCCTGGACTTTACTGACTCGCATACAGactgttttatataaatcaatacagaaacatttgtatatttagaTCAAATCTCTTTACATTCCGGAAAGAAAAGAATGtttacagtttatattttatttttttatatataaagtgttaAACTACAGAACCGCAGGGAGCGAGAGAGCCATCCTGGGCTGCCATGCGGGACTTGCCAGGCCCAGGTTCTGGGGCTGCGTCCGGCCCGGTGCACTGTGGGAGCTTCAGTTTCAAGAGCAGAGACAgcaaatgaatgcaaatgcaGTGTGGGGGTGCGAGGGCGTGATTGTGTCGGGCCCTGCTCTCCTCTCAGTGCGCTGGGTGCATTGTGTACTCTgcatgagtgtgagtgtgtgagtgtcagtgtgtgtcggCCCTGGCTCTGCTCTGGGCGGTGTCCTGGCTGAGAGAGCACCTGTGCACCTGCCAGTCCTAGAGCGCTCCCAAGCTACCTCAACACCGCCGGCGCTGCAGCCAGGCCCCATCCTCTCAGCCTCTCAGCGGACTGCACAGACTGCTGCTGCCCCCCTGCCTGCTCTGCCCATCTGACGCTGCCCTGGGTTCACCGGGGCGCCCAGCGTGGCTGCAAGGGGTGCTCAGTCTTCAGAGACGCAGCAACACGGTTTAAACAGAATTGGAGTTCTGAGGTTAGGACTGCAGTACCGTGGGATTCTGAAACAgttgccgtgtgtgtgtgcatgcgtgtacGTGTGCCTGTGCCTGTACATGAACAGGTGTTGTTCTGTGCCAAACCCATTGTTCTAAGTGGATGCAGGGGTCCACGGAGCGAGGGCAGGAGAGCCGCTGTCCTGAGGCTCCCAATCCCAGCTGAATCGATGGGTCTTGATAGTTGCTGCTAAATAGTAGTTTGTCACTAAAGTGATCCCCAATTAACATGTAGTCTAAATCTGAGTTCCGATCCACATGCACAGTGTCGGTGTGTCCGCAGGCTGAAGCTCACACTGCAGGGCTGCTTCACAGTCCCCCCACCCCGAACCCTGTCTCTGCCCCCCACTGAGGTCCTCGTATGATTATTCTCTGGGCTTTATTTATGTGCCGGGCTGCGGGGCCGTGCGGTGACCGCTGCACGACAGCCCACAGGCACTGCTGTGTTTATGCCATGTTCATATGattgtttcttgtgtttctattttacattttttatacagactgtctttgcttttcatttggtcACGCATACCTGTTGTGATGGGTCTTTTATAGTCTGTTTGTGCAGTGTTGAGCGTGTGACAGCGTGTGAGAGCGTGTGAGAGCGTGTgagagcatgtgtgtgtctgttcagTACAGGAGGGGAGGGGATTCTTGGAGCCCCGCACTCCCCCCCGGTGAGGGAGCCCCCACTGCACACCAGCCTCTACTTCATAAGTACAGGTGTCCTGCCTTCTGAGAAGGactgttattatatattgtgtttgtacataCAATccagacattatttatttttgtacagccCTCTTAatataatctttattataaattatcgcttttattattgtcattgttattactgttattatattattataattgttatcaAAAAACAGAGGGTGGTTGAGTGTTCAGAGTATTTAtgcagtattatatatatatatatatatatgtatatatatatatatttgatggaTGCTAGGTTTTGcaaactaaaaattaaaaagtgaccGTTGAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08617 ADAMTS1; a disintegrin and metalloproteinase with thrombospondin motifs 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84655 lncRNA upstream 4097 1820573 ~ 1821758 (+) True G67792
TU84544 lncRNA upstream 549639 1275991 ~ 1276216 (+) True G67699
TU84543 lncRNA upstream 575541 1250099 ~ 1250314 (+) True G67698
TU84535 lncRNA upstream 803042 981839 ~ 1022813 (+) True G67690
TU84529 lncRNA upstream 1021109 804537 ~ 804746 (+) True G67685
TU84650 lncRNA downstream 6805 1840165 ~ 1842445 (+) True G67789
TU84797 lncRNA downstream 243943 2077303 ~ 2077602 (+) True G67882
TU84819 lncRNA downstream 315089 2148449 ~ 2148654 (+) True G67899
TU84829 lncRNA downstream 500131 2333491 ~ 2333944 (+) True G67907
TU84830 lncRNA downstream 516769 2350129 ~ 2373305 (+) True G67908
AMCG00014100 mRNA upstream 12557 1799682 ~ 1813298 (+) True AMCG00014100
AMCG00014095 mRNA upstream 261281 1545327 ~ 1564574 (+) True AMCG00014095
AMCG00014096 mRNA upstream 280630 1541410 ~ 1545225 (+) True AMCG00014096
AMCG00014099 mRNA upstream 328251 1479919 ~ 1497604 (+) True AMCG00014099
AMCG00014089 mRNA upstream 392247 1412350 ~ 1433608 (+) True AMCG00014089
AMCG00014104 mRNA downstream 2470 1835830 ~ 1838007 (+) False AMCG00014104
AMCG00014102 mRNA downstream 25318 1858678 ~ 1869442 (+) True AMCG00014102
AMCG00014103 mRNA downstream 39389 1872749 ~ 1878960 (+) True AMCG00014103
AMCG00014111 mRNA downstream 67102 1900462 ~ 1902687 (+) False AMCG00014111
AMCG00014106 mRNA downstream 87979 1921339 ~ 1925062 (+) True AMCG00014106
TU84560 other upstream 341762 1483785 ~ 1484093 (+) False AMCG00014099
TU84388 other upstream 1718733 58449 ~ 107122 (+) True G67577
TU84663 other downstream 2072 1835432 ~ 1838125 (+) True AMCG00014104
TU84672 other downstream 45731 1879091 ~ 1881041 (+) True G67801
TU84682 other downstream 66860 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 293512 2126872 ~ 2130145 (+) True G67896
TU84895 other downstream 873480 2706840 ~ 2710329 (+) False AMCG00014146

Expression Profile