RNA id: AMCG00014102


Basic Information

Item Value
RNA id AMCG00014102
length 5020
RNA type mRNA
GC content 0.60
exon number 15
gene id AMCG00014102
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1858678 ~ 1869442 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aggTGCCCACGGACGGCTCGGTGGGCCTGCTGGCGGAGCCCCAGGTGGCGATGTTCTGCGGGAAGCTGAACATGCATGTGAACGTGCAGAGCGGCCGCTGGGAGCCCGACCCCACTGGCACACGCAGCTGCATCGGCACCAAGGAGGGGATCCTGCAGTACTGCCaggaggtgtaCCCTGAGCTCCAGATCACCAATGTGGTCGAGGCCAACCAGCCGGTCAGCATCCAGAACTGGTGCAAGAAGGGCCGTCAGCAGTGCCGCAGCCACCTGCACATCGTGGTGCCCTATCGCTGCCTGGtggGGGAGTTTGTGAGCGACGCCCTACTGGTCCCAGACAAGTGTAAGTTCCTGCACCAGGAGCGCATGGACATGTGCGAGAGCCACCTGCACTGGCACACCGTGGCCAAAGAGTCCTGTGGGGACCGCTCCATGAATCTCCATGACTATGGCATGCTGTTGCCATGTGGGATTGACCGCTTCCGTGGCGTGGAGTTCGTGTGCTGCCCCTCGGAGGCGGAGCGTGACGACAGTGCCCAGCTGGAGGAGGACGACTCAGACGTGTGGTGGGGCGGAGCTGACACGGACTACACCGACAacagtGAGCCCCGGGAGGCGGGTCAAGCCGAGGTGAAGGAGGAAGGTGCCGAGGCAGCCCTGGGGGAGGATGACGAGGatgtggaggaggaagaggaggaggaggaggaggaggaagacgacGAGACGGAGGAGCCGGAGGCCAGCGAGCGCACCACCAGCGTGGCCATGACGACCACGACCACGACCACCACGGAGTCGGTGGAGGAGGTGGTGCGAGaggTGTGCTCAGAGGCGGCGGAGACCGGGCCGTGCCGGGCCATGTTGCCGCGCTGGTTCTTCGACAGTGAGGAGGGCCGCTGCGCTCAGTTCATCTACGGCGGCTGCGGTGGCAACCGCAACAACTTCGACTCCCAGGAGtactgcctgtctgtgtgcgGCAGCGTGTTGCCCACCACCGCCCCCAGCCCCCCCGACGCCGTGGACCGGTATCTGGAGACGCCCGGCGACGAGAACGAACACGCCCACTTCCAGAAGGCCAAGGAGAGCCTGGAGGCCAAGCACCGCGACAGGATGTCAcagGTGATGAGAGAgtgggaggaggcagagagacaggCCAAGAACCTGCCCCGTGCCGACAAGAAGGCCGTCATCCAGCACTTCCAGGAGAAGGTGGAGTCTCTTGAGCAGGAGGCGGCGAGCGAGCGGCAGCAGCTGGTGGAGACGCACATGGCCCGTGTGGAGGCGCTGCTGAACGACCGGCGCCGGCTGGCCCTGGAGAACTACCTCACCGCCCTGCAGGCCGACCCCCCCAAGGTGCTGACCCACCTGCGGGTGATCGAGGAGCGCATGAACCAGAGTCTGGGGCTGCTGTACAAGGTGCCCGGCGTCGCCGACGACATCCAGGAGCAAGTGGACGAGCTGGTGCAGAGGGAGCAGGCGGACGTGTGGGAGCAGGTGGCGTCTCTGCAGAGCGAGGGCAGGGTGAGCTACGGCAACGACGCCCTCATGCCCTCGCTGGCGGACAGCACCGCCCCGCTGGACCTGCTACCCCAGGAGGAGGGCGGCATTGGCCGGGACGGGCTGGGCTACATCCACCCCGGCGGCTTCGGACCCGCCAACACCCAGAACCAGGtggAGCCCATCGATGTGCGTCCCGCCCCTGACAGAGGACTCCCCACCCGGCCTGGCTCAGGTCTGCCGGGGGTGATTGTGGAGGAGGTGCCCGAGTTGAGGATGGAGGCAGAGGAGCGACACAGCACTGGGTACGAGGTGCGCCACCAGAAACTGgtgttCTTCGCGGAGGACGTGGGCTCCAATAAGGGGGCCATCATCGGGCTGATGGTGGGAGGCGTCGTCATTGCGACCGTGATTGTGATCACGCTGGTGATGCTGAGGAAGAAGCAGTACACGTCCATCCATCACGGAGTGGTAGAGgTGGACGCGGCAGTGACTCCAGAGGAACGCCACCTGTCCAAGATGCAGCAGAACGGCTATGAGAACCCCACCTACAAGTTCTTCGAGCAGATGCAGAACTGAGGccccactctccctccctcttcctcctctcctcctcctcctcctcctcctttccctCTCCTATCGTCCCcaggcccctccccctctgACCTCCAGGCTTGCCCCAGTGTCCAGGGCAGTGTGTGTCCAGCACTGACGCACTGAGCACACTGCGGCTCTGTCAGTGTGTCCTCCCGtccgtcagtgtgtcagtcagtcactgtgggtgtctgtctgtgtgtccgtcagtcagtcagtctgagGCACGGCACTCCCCTGTGCTGTGATTGGACCGGATCCGAGAGGCCTGTTCTGATTGGACAAGGGGCCCTTCTCCACAGCAATAGACCactacccccctcccccctgttGCTGGGGAGAGGTGTCTTTGTCCAATCAGCAGGCTTGCAGCAGGGAGGCCACGCCCCCTCGTGCTCCGGTGAGGGGCGGCACGGAGGCGGGCCGCTGACTGGCAGTGAGCCGGTGCCGAGAGCGGCCCACACTGCCCTGGCAGGGTGGCACCGGGGACAGGGAGCAGGCGGGGCTCTCTGCTCGATGCCTGTGCCctactctctctcccctccccttccctcctctcctctctctccctcctatccctccttctttccctcctcctctcctccttttTTCTGGTGACAGCTGCGCTGTGCTTGACCACACACAGGTtcttaatgaaaagaaacaaaaacactcagTAATGTCTTTGatgagctttttattttattattttattgtttctttgtttgtttttccaaaaaaaaaagaaaatagaaaaaaaactaaaacaaaaaaaacaaacctgatTATAAATAATCGAATCACTGAAGAAAGACAGGaagttcaaataaaaaatggaaaaaaaggtgAAAACGGAGGACCGCCAATCCGagctgaatgttttttatttccgtGTGATGTGTCCAGTTGCGGACAGAGGCCAGCTGTTGCTGTGTAGTGCATGACCATAAATACAggacaaaatgttaataatgaaaaaaaaactaaaaaaatggagaaaaaaaaagtgctaatTGCGCGTTTGTTTTCCGTTCCGCTATCTGGCCTCGTCCTTCTCCTGTAGAGACTGTGTATTTTAGCAGGGTTGTAAAGTTAGTACTTCTTTGTGATCACGTGgtttaaaaaacgaaaacaagACGATCTCAGATTCAGAGTCTCCGGTCTGCTGTTTCAGAGACTCCGCTCCGCTCCGCTCATCCGTCTGTTGAGTTCAGGTTTTCGGGggtctgtttatatatatttttgttcgtCCTCCTATGTAGCAGCTCCCCCTGGTGTCCAGAGCTCGCGTCGCGTggccgggggggcgggggttgtGCTGTTCATCGGAGCGGTCGCGTTGGCTTCCTATGCATTCTGAGAGAGTCGTTCTGGATCTCGTTAAGacgtttcattttattttattgtctggTGTTTGACTTTATTCTCCCGTTGTCACCGTGGTGGTGCCCGGGCCCCTGGGCGGAGGAGCCGGCCTCTGTTCCtcgtcatcctcctcctctccgGACAGCTGGACGGACCCCTCATCCCTCGCTCAGCCTCTCTTCCTCTCGCCTCGCAGTCTCCCCTCCTGTCCCATGGGTTGCCGTTGTGCTGTCCTGGCAGTGGGAGCCGCCGGTCGAGTCGGAGGGAGTGGTTAGTGGTGTGGGCGTGGCTTTGTGCCACCGGCTGCTTTTGTGGCGGTGGGGTGGGTGGCAGCAGACGTGTCCGAGCATGTGCAATGGTGTGGGTGTGGCCGGGCCGTGGAGAGTAACGACAGGgtgagagaggcagaggagagtgagagagagacgtgTTATTgtagagagatgagagagaggatGTATGTGTGAGAGACGCACCTCCTTTTCTGAGCAGCCTCCCCAACACCCCCAAGCTTCCCCTCTTAAGTCTTACCCCCCCCATGGCCACAGCCCCTAATTGGCTCCTTCGTTACTTAATTGGCCTGTCGGAATGTGGAATGTAGCAAGACGGCCCCGGCAGCCGGCTCCTGCACTAGCTGTGgcctcctgcccccccaccccccgttaTTAATGTTCAGTCGTGGGAGTGTGTGTCGGGCGGCGCCGGGTCCGAAGGCAATGTTGTGTTTCTCCACCAGATCCCCGTCAGGCGACTGACAGCGCTGCCCAGCTGCAGGAAGACAGGAGGCTTAGAAACAACACAGTCCGGTGGGGCCTCGGACCAGGGCGTCCAGAGCTGCTGACCCGGGCCGGAGAACGGAGTGGGGGGGTCGGGGTCGGGGGTCAGAGTCCGGGACAGGGACAGGGTGCGGAGGATTTGGGCATGGGTCAGTGTGAGGGTGTGTTCAGCAGACGCCTCCTTTAGCTCCGTCAGTGCGTGGCAGTCTCCAGCCCATGTGCGCGTccgagagggacacacacacacacacaggtattcACACACTCGCTTAGTCGCACTCACTCACTTCCTCTCATGTAGTCACACTATTGGCGCACTCTGACACAGTCGGACACGCACCAAGTCGCACTCTTAAACCAAAGCTCTCGAACCGGGTGCGTGTCTCTCCACGCTGGGCCGATCAGAAGCCGGAGCTCTGGCCTGTTGAACTCTGACCCCCTGTGGTGGGCGGGGCAGCCTGGACTGTACCAAAGCCAGCGCAGGCGGGGGTGGTGGAGTGGGGAGAGGGGCGTGGCTTATTTCATccgtgtgtgtcagtgcaggcGACTCTTCTTCTTGCTCTTGTGACGATGCTGTGCTTCGCCACCAGCTCTGGACGGACCGCCCCGCcccgctcgctctctctctccctctcccgcaGTGCGAGTGCGGGCCCGGGGGCCGTGGAGCCGGGGGattctctgtatctctgtgcgACTGTACAAACATTGCTGTGACTGGGAAAGCTTTCTACActgtattacataaataaacttcAAAAAAACAAGGCGGCACTGCGCTCTGGC

Function

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008201 heparin binding molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K04520 APP; amyloid beta A4 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84650 lncRNA upstream 16233 1840165 ~ 1842445 (+) True G67789
TU84655 lncRNA upstream 36920 1820573 ~ 1821758 (+) True G67792
TU84544 lncRNA upstream 582462 1275991 ~ 1276216 (+) True G67699
TU84543 lncRNA upstream 608364 1250099 ~ 1250314 (+) True G67698
TU84535 lncRNA upstream 835865 981839 ~ 1022813 (+) True G67690
TU84797 lncRNA downstream 207861 2077303 ~ 2077602 (+) True G67882
TU84819 lncRNA downstream 279007 2148449 ~ 2148654 (+) True G67899
TU84829 lncRNA downstream 464049 2333491 ~ 2333944 (+) True G67907
TU84830 lncRNA downstream 480687 2350129 ~ 2373305 (+) True G67908
TU84919 lncRNA downstream 876802 2746244 ~ 2755484 (+) True G67983
AMCG00014104 mRNA upstream 20671 1835830 ~ 1838007 (+) False AMCG00014104
AMCG00014101 mRNA upstream 25318 1825855 ~ 1833360 (+) True AMCG00014101
AMCG00014100 mRNA upstream 45380 1799682 ~ 1813298 (+) True AMCG00014100
AMCG00014095 mRNA upstream 294104 1545327 ~ 1564574 (+) True AMCG00014095
AMCG00014096 mRNA upstream 313453 1541410 ~ 1545225 (+) True AMCG00014096
AMCG00014103 mRNA downstream 3307 1872749 ~ 1878960 (+) True AMCG00014103
AMCG00014111 mRNA downstream 31020 1900462 ~ 1902687 (+) False AMCG00014111
AMCG00014106 mRNA downstream 51897 1921339 ~ 1925062 (+) True AMCG00014106
AMCG00014112 mRNA downstream 139160 2008602 ~ 2022266 (+) True AMCG00014112
AMCG00014113 mRNA downstream 155156 2024598 ~ 2028511 (+) True AMCG00014113
TU84663 other upstream 20553 1835432 ~ 1838125 (+) True AMCG00014104
TU84560 other upstream 374585 1483785 ~ 1484093 (+) False AMCG00014099
TU84388 other upstream 1751556 58449 ~ 107122 (+) True G67577
TU84672 other downstream 9649 1879091 ~ 1881041 (+) True G67801
TU84682 other downstream 30778 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 257430 2126872 ~ 2130145 (+) True G67896
TU84895 other downstream 837398 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other downstream 837398 2706840 ~ 2710329 (+) False AMCG00014146

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001478 False 2049 mRNA 0.58 18 NC_007112.7 621374 ~ 656693 (-)
grasscarp (Ctenopharyngodon idella) CI01000299_05428160_05443433.mRNA False 2539 mRNA 0.53 17 CI01000299 5427661 ~ 5443433 (-)