RNA id: AMCG00014103



Basic Information


Item Value
RNA id AMCG00014103
length 1209
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00014103
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1872749 ~ 1878960 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCCCTCCTCCATGCAGTCCTGCTTCTCCTGGCCATCGATCTCGATCTCAATCAGCTCCTCCGTCTCTCCCTTCGACATCACGGACAGCACTGATGGTCTGCCTGAGACGCTCGCTTTGGTCCGCGTTTGCAGCGCTGTGTCCGGGTCGCCGTGTCGCTCGCTGCTCTGGTCCAGCGGCCCCGTCTCTGTCGGTCCCGTCTGCGTTGCGTGAGAGGCACAGCCGGGGGGAGGGGAGCGCGGAGTCGCGGTCAGCGCGGAAAACAGCCGTAACTGACGGAGAAATAAAGGTCAAAATGAACCGCAAGAGCTGGATGTGTCAAATGCAGGACGACACTCACGCCTGTCCGCCGTGGAGACACTGTGCGCGGGATAGGCCCGCTATAAACGCCGGGGAAGAGCTCGCCACTTATAAGACTACAATTCCCAAGTGCTTTGCGCGTCTGTGTCCCTTTATCCCACCTCAGCCTCTCGACTTACAAGATGGCGTCTGTAgtccttttttaattgaaatatagtGTACgcttttaattaacaatgtgAAAGCACTACGATCTAATCTGAATCTACGGGAACTGAGTCATATGTTTGGCAATTTTTATAGAAAAACAcgaagttttttttaatgcgcGGACCGGAAGTTAGAGTTGGGAGTATTTCCGGCGAATCCGTCCTCTACTCTACCCAGAGTGCACTGCGCGTCCGTGTCAGCCATTGCTCGGTTTGCAGCGCAGTGTCAAGTACAAGGTGACTATCGCTGCTGTTTTGGTTCGGCCCGGTTCCGTGCTTTTCCAGtatgaCTGTGCAGCGTCTGTTCCGCCTGTCCTCTCTGCTTCGCTCAGCGGTGTCCTGGCAGCTGCGCAGGAATGTGGGCCTGTCCGCCGCCGCGATGACCGCCGCCAAGAACCTGGACCCCGTGCAGAAGCTGTTCCTGGACAAGATCCGGGACTACAACACACGCAGCAAGACGGCGGGCGGGGTGGTGGACGCCGGCCCAGAGTACCAGAAGAACATGGCGGACGAGCTGGCCAAGCTGCAGCGGCTGTACGGCAGCGGTGGAGAGGACCTGGCCAAGTTCCCCACCTTCACATTCCCCGagccCAAGCTGGAAGAAGTGGCGTCTAAGTGAGGCCTGCGGCGGCCCGTCCCCCTGCTCCTGTGTCCCCACTGCTACActagatatttaattaataaacgaCATTGGTTAGAACA

Function


GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02131 ATPeF0F6, ATP5J; F-type H+-transporting ATPase subunit 6

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84650 lncRNA upstream 30304 1840165 ~ 1842445 (+) True G67789
TU84655 lncRNA upstream 50991 1820573 ~ 1821758 (+) True G67792
TU84544 lncRNA upstream 596533 1275991 ~ 1276216 (+) True G67699
TU84543 lncRNA upstream 622435 1250099 ~ 1250314 (+) True G67698
TU84535 lncRNA upstream 849936 981839 ~ 1022813 (+) True G67690
TU84797 lncRNA downstream 198343 2077303 ~ 2077602 (+) True G67882
TU84819 lncRNA downstream 269489 2148449 ~ 2148654 (+) True G67899
TU84829 lncRNA downstream 454531 2333491 ~ 2333944 (+) True G67907
TU84830 lncRNA downstream 471169 2350129 ~ 2373305 (+) True G67908
TU84919 lncRNA downstream 867284 2746244 ~ 2755484 (+) True G67983
AMCG00014102 mRNA upstream 3307 1858678 ~ 1869442 (+) True AMCG00014102
AMCG00014104 mRNA upstream 34742 1835830 ~ 1838007 (+) False AMCG00014104
AMCG00014101 mRNA upstream 39389 1825855 ~ 1833360 (+) True AMCG00014101
AMCG00014100 mRNA upstream 59451 1799682 ~ 1813298 (+) True AMCG00014100
AMCG00014095 mRNA upstream 308175 1545327 ~ 1564574 (+) True AMCG00014095
AMCG00014111 mRNA downstream 21502 1900462 ~ 1902687 (+) False AMCG00014111
AMCG00014106 mRNA downstream 42379 1921339 ~ 1925062 (+) True AMCG00014106
AMCG00014112 mRNA downstream 129642 2008602 ~ 2022266 (+) True AMCG00014112
AMCG00014113 mRNA downstream 145638 2024598 ~ 2028511 (+) True AMCG00014113
AMCG00014120 mRNA downstream 204466 2083426 ~ 2113366 (+) True AMCG00014120
TU84663 other upstream 34624 1835432 ~ 1838125 (+) True AMCG00014104
TU84560 other upstream 388656 1483785 ~ 1484093 (+) False AMCG00014099
TU84388 other upstream 1765627 58449 ~ 107122 (+) True G67577
TU84672 other downstream 131 1879091 ~ 1881041 (+) True G67801
TU84682 other downstream 21260 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 247912 2126872 ~ 2130145 (+) True G67896
TU84895 other downstream 827880 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other downstream 827880 2706840 ~ 2710329 (+) False AMCG00014146

Expression Profile