RNA id: AMCG00014106


Basic Information

Item Value
RNA id AMCG00014106
length 495
RNA type mRNA
GC content 0.60
exon number 6
gene id AMCG00014106
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1921339 ~ 1925062 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTGGTCTGACTTAGCTGCGAAACAGTTTGGATTCCCAGACATCGAGCTCTTTGTTAAGGCGGGCAGTGATGGGGAGAGCATTGGCAACTGCCCCTTCTCGCAGCGCCTCTTCATGATCCTGTGGCTGAAGGGAGTGATCTTCAACGTGACCACCGTGGACCTGAAGAGGAAGCCGGCCGACCTGCAGGACCTGGCCCCGGGGACCAACCCCCCCTTCGTCACCTTCAATGGTGAGGTGAAGACAGACGTCAACAAGATCGAGGAGTTCCTGGAGGAGAAGCTGCTGCCCCCTCGCGCCGACGAGCCGTCTGCCTCCTGCCGCAGCTTCCTGGACGGAGAGGAGCTCACGCTAGCCGACTGCAACCTGCTGCCCAAGCTGCACATCATCAAGGTGGTGGCGTGGAAATACCGTGGGTTCAAGATCCCGGTGGAGATGGAGGGCGTGTGGCGCTACCTGCACAGCGCATACCGCCGGGAGGATCTCGGTTAA

Function

GO:

id name namespace
GO:0051963 regulation of synapse assembly biological_process
GO:0051965 positive regulation of synapse assembly biological_process
GO:0050807 regulation of synapse organization biological_process
GO:0050808 synapse organization biological_process
GO:0007416 synapse assembly biological_process

KEGG:

id description
ko04514 Cell adhesion molecules
ko04727 GABAergic synapse
ko05032 Morphine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84650 lncRNA upstream 78894 1840165 ~ 1842445 (+) True G67789
TU84655 lncRNA upstream 99581 1820573 ~ 1821758 (+) True G67792
TU84544 lncRNA upstream 645123 1275991 ~ 1276216 (+) True G67699
TU84543 lncRNA upstream 671025 1250099 ~ 1250314 (+) True G67698
TU84535 lncRNA upstream 898526 981839 ~ 1022813 (+) True G67690
TU84797 lncRNA downstream 152241 2077303 ~ 2077602 (+) True G67882
TU84819 lncRNA downstream 223387 2148449 ~ 2148654 (+) True G67899
TU84829 lncRNA downstream 408429 2333491 ~ 2333944 (+) True G67907
TU84830 lncRNA downstream 425067 2350129 ~ 2373305 (+) True G67908
TU84919 lncRNA downstream 821182 2746244 ~ 2755484 (+) True G67983
AMCG00014111 mRNA upstream 18652 1900462 ~ 1902687 (+) False AMCG00014111
AMCG00014103 mRNA upstream 42379 1872749 ~ 1878960 (+) True AMCG00014103
AMCG00014102 mRNA upstream 51897 1858678 ~ 1869442 (+) True AMCG00014102
AMCG00014104 mRNA upstream 83332 1835830 ~ 1838007 (+) False AMCG00014104
AMCG00014101 mRNA upstream 87979 1825855 ~ 1833360 (+) True AMCG00014101
AMCG00014112 mRNA downstream 83540 2008602 ~ 2022266 (+) True AMCG00014112
AMCG00014113 mRNA downstream 99536 2024598 ~ 2028511 (+) True AMCG00014113
AMCG00014120 mRNA downstream 158364 2083426 ~ 2113366 (+) True AMCG00014120
AMCG00014124 mRNA downstream 236695 2161757 ~ 2172540 (+) True AMCG00014124
AMCG00014122 mRNA downstream 254584 2179646 ~ 2195573 (+) True AMCG00014122
TU84682 other upstream 18724 1900220 ~ 1902615 (+) True AMCG00014111
TU84672 other upstream 40298 1879091 ~ 1881041 (+) True G67801
TU84663 other upstream 83214 1835432 ~ 1838125 (+) True AMCG00014104
TU84560 other upstream 437246 1483785 ~ 1484093 (+) False AMCG00014099
TU84388 other upstream 1814217 58449 ~ 107122 (+) True G67577
TU84815 other downstream 201810 2126872 ~ 2130145 (+) True G67896
TU84895 other downstream 781778 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other downstream 781778 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other downstream 781778 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other downstream 783962 2709024 ~ 2710329 (+) True AMCG00014146

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000312_00203359_00208140.mRNA True 2008 mRNA 0.40 5 CI01000312 201999 ~ 208140 (-)