RNA id: AMCG00014112


Basic Information

Item Value
RNA id AMCG00014112
length 2867
RNA type mRNA
GC content 0.61
exon number 6
gene id AMCG00014112
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2008602 ~ 2022266 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACCCGGCCCCCGGACGCCGCttcacccccccctccaccacgCTCAGCCCGGGCAAGATGAGTGACGCGCTGCCGCTGGGGGGACAGGACAGCAGCGCTGCCCTGGTGGGGAAGCTGCGCATGGCGGACCGCAGCATGGTGGAGGTGCTGGCGGACCACCCGGGAGAGCTGGTCCGCACCGACAGCCCCAACTTCCTCTGCTCCGTCCTGCCCACCCACTGGAGGTGCAACAAGACCCTGCCCATCGCCTTCAAGGTTGTTGCACTGGGAGACGTGCCCGACGGCACACTGGTGACAGTGATGGCGGGGAATGATGAGAATTACTCGGCGGAGCTGCGCAACGCCACGGCCTCCATCAAGAACCAGGTGGCGCGCTTCAACGACCTGCGCTTTGTGGGCCGCAGTGGGAGAGGCAAGAGCTTCACCCTGACCATCACCGTGTTCACCAACCCGCCGCAGGTCGCCACCTACCACCGCGCCATCAAGATCACCGTGGACGGACCGCGTGAGCCCCGCCGGCACCGCCAGAAGCTGGAGGAGCCGGTGAAGCCGGGCAGCCTGGCGTTCTCAGAGCGCCTCAGTGAGCTGGAGCAGCTGCGCCGCACCGCCATGAGGGTCAGCCCTCACCACCCCAGCGCCACAGTCAACCCCCGGCCCCCACTCAACCACGCCGCCCCCTTCTCCAGccccacacacagccagctcTCGGactccAGGCAGATGCAGACGTCCCCCTCCTGGGCCTATGAGCAGTCCTACCCTTACCTGGGCCAGATCTCCACCCCCTCCGTCCACACGGCCATGCCCATCTCCCCCGGCCGGGCGGGGGGCATGTCCACGCTCTCTGACCTCTCCAGCCGTCTCTCTGGCCCTGACCTGACGGCCTTCAACGACCCCCGGGTCGGGCTAGAGCGCCAGTTCTCCTCGCTGCCGGACGGCCGCTTCTCGGACCCGCGCGTGCACTACCCCGGCCCCTTCACCTACACGCCCACACCCGTCACCACGGCCATCGGCATCGGCATGTCAGCCATGACGGGCACCGCACGCTACCACACCTACCTGCCCCCGCCATACCCCGGGGGCTCCTCGCAGGGCCAGACGGCCACGGCCTTCCAGCCCGGCTCACCGCCCTACCACCTGTACTACAGCACGGCAGCCGGCTCCTACCAGTTCTCCATGATGTCCGGCGGGGACCGCTCGCCCCCCCGCATCCTGCCGCCCTGCACCAACGCCTCCACCGGCTCTGCCCTGCTGAACCCCTCGCTGCCCAATCAGAGCGAGGGGGTGGAGACTGAGGGCAGCCACAGCAGCTCCCCTACCAACATGGCCGCCGGAGCTGGTCGCCTGGAGGAGGCGGTCTGGCGGCCATATTGAGCACTGTGCCGGCGCCCTCACAGACAGCCCTGCGGTGCCAGCGCACCCCCACTCTGAGCTTATTCTTTTTGTATCAAGAAGGATTGTCCACAGAGAACACTGGTCCCCTGGGGCACGGGGGGACATGCCAGGGGGCAACGGGCGacttctctgtttctctcaaAGTTACtgctattttttataattaattattgctgttattattgttgttgttgttgttgttattattattattgctattaattATTATGACCCCCCTCCTTTTTCAAAATAAGAAGAGACATAAACTGTGAAGGGTTTCTGATTGGCAGACTGTGAAGACGCTTGTTTCGTAGGAAGAAGGTTGCTTTCATTCCGGGGGCTTCACAGATCCTGACGCTGCTCCCGGGGGTCTGGCGCTCTGGGGGGCTGAAGGCGTCCGCGGCACTTTGTGGTGGTCTGTCTGTGTAGTCCCGACTTCCAGTTGACTCACTAGTGCGGGAAACTAAGAGCGAGGGGAAGGCAGTCCTGCGTGTGAGGCTGGGGGAGAGGGACGGGGCTCCCGGAGGCAGGCTGTGCCGGACGCACCACACTGCAGCGCTCTGTTTGTATCCGTGGCTGTAAACACATCCATCTTCACCAAAACAACGCCTAATCCACAGCCAAAACACATCTTTTGTTCAGCTGTTGTGGTTCTGCCGCCACCTCGGGCCCCGTTCTGGAGCCCATCTGGTGTAATGCGAGCCGGTTTGCTCTGTGCCGGGCGTTCCTTTGTGCCGCCGTGGCTGTGTGTGACGCTCTGTGTCCTAGGTAACGCAGCCTGGCTCGGGCAAGGGGTGTCGCTCGCTGCAGGGCCACAGTGTTGACAGGGCCGAGCCCAGAGTCTGTGTTTGTACAACAAACACGCAGCGTCACCGACTCTGACCCCGCAGTCCCGAGCTGTGTAAGTCTCCGGCTGTCAGAGCCCGGCACACTGAGCTCCGGCCGCTGCCAGCTGCGTGAACCGAAGAacgaattaaacaaatacaaaataagtaattcaaATGGAGACAGACCAAAAAAGCTGGACacatcagcagagagagagagagagagagagaatatttaATAGCTAAACtgattgttgctgttttgttgcTCTCATCTCTGCGTAGGCCTGGAGCAGCGACCAGCACTGCAGGACGGCCGAGCGCACACCGAGGGCCCGGAGTGCAGCGCTGGGGCCAGGGTTAGAGTCAGGGTCAGGGTGAGGGCCGGGGTGTAACTTCAGTTATGGTacagggtgggggtggggttggcCCCTGTGCCACAAGACACAAGCTCTTTCACCCCGTCTCCCCCGTGACTGATGCTGCCGGAGAATCCACCTCTGAGCTCAGTTTAAATCTCCCTCGGGTCACATGACTGACGGCCTCAGCGACGCTCCATCCCCACGTTGTGCTCCGATCGCTGTCGGAagttctatttttgttttgtttttttactgtattttatttgtcggtgttaatgttgta

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0001568 blood vessel development biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K08367 RUNX1, AML1; runt-related transcription factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84650 lncRNA upstream 166157 1840165 ~ 1842445 (+) True G67789
TU84655 lncRNA upstream 186844 1820573 ~ 1821758 (+) True G67792
TU84544 lncRNA upstream 732386 1275991 ~ 1276216 (+) True G67699
TU84543 lncRNA upstream 758288 1250099 ~ 1250314 (+) True G67698
TU84535 lncRNA upstream 985789 981839 ~ 1022813 (+) True G67690
TU84797 lncRNA downstream 55037 2077303 ~ 2077602 (+) True G67882
TU84819 lncRNA downstream 126183 2148449 ~ 2148654 (+) True G67899
TU84829 lncRNA downstream 311225 2333491 ~ 2333944 (+) True G67907
TU84830 lncRNA downstream 327863 2350129 ~ 2373305 (+) True G67908
TU84919 lncRNA downstream 723978 2746244 ~ 2755484 (+) True G67983
AMCG00014106 mRNA upstream 83540 1921339 ~ 1925062 (+) True AMCG00014106
AMCG00014111 mRNA upstream 105915 1900462 ~ 1902687 (+) False AMCG00014111
AMCG00014103 mRNA upstream 129642 1872749 ~ 1878960 (+) True AMCG00014103
AMCG00014102 mRNA upstream 139160 1858678 ~ 1869442 (+) True AMCG00014102
AMCG00014104 mRNA upstream 170595 1835830 ~ 1838007 (+) False AMCG00014104
AMCG00014113 mRNA downstream 2332 2024598 ~ 2028511 (+) True AMCG00014113
AMCG00014120 mRNA downstream 61160 2083426 ~ 2113366 (+) True AMCG00014120
AMCG00014124 mRNA downstream 139491 2161757 ~ 2172540 (+) True AMCG00014124
AMCG00014122 mRNA downstream 157380 2179646 ~ 2195573 (+) True AMCG00014122
AMCG00014123 mRNA downstream 199349 2221615 ~ 2222904 (+) True AMCG00014123
TU84682 other upstream 105987 1900220 ~ 1902615 (+) True AMCG00014111
TU84672 other upstream 127561 1879091 ~ 1881041 (+) True G67801
TU84663 other upstream 170477 1835432 ~ 1838125 (+) True AMCG00014104
TU84560 other upstream 524509 1483785 ~ 1484093 (+) False AMCG00014099
TU84388 other upstream 1901480 58449 ~ 107122 (+) True G67577
TU84815 other downstream 104606 2126872 ~ 2130145 (+) True G67896
TU84895 other downstream 684574 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other downstream 684574 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other downstream 684574 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other downstream 686758 2709024 ~ 2710329 (+) True AMCG00014146

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001489 True 2220 mRNA 0.52 7 NC_007112.7 1362932 ~ 1402303 (-)
grasscarp (Ctenopharyngodon idella) CI01000299_04864582_04885052.mRNA True 1866 mRNA 0.56 5 CI01000299 4864192 ~ 4885385 (+)