RNA id: AMCG00014113


Basic Information

Item Value
RNA id AMCG00014113
length 2672
RNA type mRNA
GC content 0.67
exon number 10
gene id AMCG00014113
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2024598 ~ 2028511 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACGAAACGTCCCGGCCAGTCCCGAAGCAGGGCGCCTTCAGTGCGGCTGCGTCACATAAACCAGGCCTGCGCGGCACGCCGGCTCCGCCCAGCGCGGTCTGCCGGGAGAGTGACGTCAGAGCGCTGCGCTGCTGTCGCGccaaatttgtgtgtgtgtctgcagagagagagcgccGGTACACACGGGTTACACACGGGTTACACACGGGTTACACACGGCCACCTCGCACCGGGCACAGTGAGCGGAGCCGGCCTGCACTCGCTACCCCGGCCGGTGTGACAGACCGCAGTGCGCCCTCAGTGGGACTCGGGCGGACAATGGCGGAACAGGCGGGTTACTCTCCCAGCTTCAAGAGGCCGGCAGACACCCTGCGCCTGCGGAGGAAGCGAGCTCTCAGCGAGGGTCTGGGCGCCGGCCGCCGGCCAGCAGGGCTCAGTCCCGGGGCAGCCGTGCCCGGAGTCAGGCCCTTCTCGCCCGGGCCGCTGCTGGGCTCGGAGCCGCGGCCCGCCGGCAGGAAGCGCAGGAACCCGTTCGCCAGCATCGAGAACACCTGCGGCAGCCCGAGCAAGAGGCCCGCGCCGGCGGGGCTGCGGGGCGGCCGGGCGCCCGTGGAGGCCGCGGGGGAGAACAGTAAGGCGCTGTCTCTGGCAGAGGACGACTGTCTCTTCGATGAGGACCCGGTGCTGGACGGCCAGGCTGCCCCGGCGCTCCACTCGAGCCCCCAGGCCCCAGTGGACTGCGCCCCCCCAGCCTCCTCTCGCTGCGTGGAGTTCCCTGCGGACTGGAGTCTGAAGACGCGGCTGCTGTTCACCTCCCCGCTGCCCTTCACCTGGACGGAGCACCTCAAGGCCCAGGAGGAGGCCCAGGGGCTGACCCAGCACAGCCGCGCCGCCCATGCCAGCCTGCCCACTCACATACAGGAGCCGCGGAGCTGCGCCGAGCTGCGCCGTGCCTTCCAGCAGAGCCTGCTGTTCTGGCAGCACCCCTCCCTGCCCTGGATCCCCCTGTTCCCCCGCATCGGGGCGGACCGTAGGCTGGCCGGCAAGAGCTCCCCCTGGAGCCAGGATGAGGGGCTGCGGCAGACCCTGATGAGCGAATGGTCGGCGAGCCTCACGTCGCTGCACTCCCTGCTCCGCGCGCGCCTCTGCCCCTACTTCTACGTCTGCACCCACCAGTTCTCCGCGCTGTTCCGGGCGGCGGGGCTGGGAGGCGCCCCGGTCATCACGGCCCTGCTGACCCCCACCACCCGCGGCCTGCGAGAGGCCATGAGGAGCGAGGggaTCGAGTTCACGCTGCCCCTGCTGGAGGAGAAGGGCAAGTGCCGGAACTCGGAGTCCGTGTCGTCGGGCTCAGAGGGTCCACTGCAGACCGGGCCAGGAGACAGGCAGTGTGGGTCAGAGGCCCGTGACAGCGGtggcgaggaggaggaggaggaggaggaggaggagcagcagcagcagcagcaggaggaagaggacgaTGATGACGACGGCGGATTCTCGTGGCTGATGGAGATGGGCGTCCAGGATAAGATCAAGAAACCCGACTCCATCTCGGTCAAACTCCGGAAGGAGCACGGCACGGTGCGTCTGGACCACAAGCCGGAGTCTGTGGTGCTGGTGCAGGGGCCCGACACCTTCACCCTCCTCAACTTCCTCATCAACTGCAAGAGCCTGGTGGCGTCGGCGGGACCTCAGGCCGGGCTGCCCCCCACGCTGCTCGCGCCCGTCGCCTTCCGGGGGGCCACACTGCAGACCCTCAAGGCGCGCAGTGTGAGTGTGAAGACCCAGGGCCGCTCGGGGCTGCAGGACCAGTTCAGTCTGGAGGTCACGGGTCCGGTGATGCCCCACGCCCTGCACGGCCTGACCCTCCTGCTGCGGCCCGCCCAGCGCGGCTCCTTCTGCGCCGGGCTGTACACCCACGAGCCCACGGCCGTCCTCAACACGCCGCTGGGCCCCCCCGCCGCGCCCCTGCAGCAGGCTGGCGCGGAGCGGGACCTGGGGGGCTGCGCTCTGCACCCCGACACCCTGCGGCAGCTGCTGGAGCCGGCGACGCTGGGGAAGACCGCCCTCCGACAGCTGGCCATGAAGGACTACGGCTACACCTGGAGAGCCTGAGACCCCCGTGCCACCGCCGGacaccgccccccccacactgcCACAAAACGGATCTCACTCTTGTCCTCTGGTTGGACTTTGGGATTCCTCAGgtttcatgtttgtttatttccgTAAGCTGCGGATTTTAATGCATAGTGCTGCTGACGCTCAGGTGTTTGAGTCCCTCCTCCCAGGCAGGACGCTGCCCGGTGTTTTACCCAGTCTATGTGTGAGAGGTTTGTTCTATTAAATCGTTCACTCTGTGGATGGTCTGTGTCTGTCCTTGCTCTGAGGGGATTTTGCCGCTTGTTGTGCCGTTACACACGTGTTGTTGCACACCGCTCCGAAGCCACTGCCGTGTGCTCACATCCGTCTGCATGTGCTGTAGGACACGCGTGTAACACGGCTGGGTGTCCGTTTCGGGAGGTTCTGTCCGTCACCTCTTGGGCTGCTGGCGGCTGTTTATAAATGGGGAAAACAGGCGTCAGCAGCAGCTTTCAGGACAAGAATAATATGGCACACCACACCACCCTGCTCTGAGCATggcacactgcactgcaccacaCCAC

Function

GO: NA

KEGG:

id description
K22422 DONSON; protein downstream neighbor of Son

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84650 lncRNA upstream 182153 1840165 ~ 1842445 (+) True G67789
TU84655 lncRNA upstream 202840 1820573 ~ 1821758 (+) True G67792
TU84544 lncRNA upstream 748382 1275991 ~ 1276216 (+) True G67699
TU84543 lncRNA upstream 774284 1250099 ~ 1250314 (+) True G67698
TU84535 lncRNA upstream 1001785 981839 ~ 1022813 (+) True G67690
TU84797 lncRNA downstream 48792 2077303 ~ 2077602 (+) True G67882
TU84819 lncRNA downstream 119938 2148449 ~ 2148654 (+) True G67899
TU84829 lncRNA downstream 304980 2333491 ~ 2333944 (+) True G67907
TU84830 lncRNA downstream 321618 2350129 ~ 2373305 (+) True G67908
TU84919 lncRNA downstream 717733 2746244 ~ 2755484 (+) True G67983
AMCG00014112 mRNA upstream 2332 2008602 ~ 2022266 (+) True AMCG00014112
AMCG00014106 mRNA upstream 99536 1921339 ~ 1925062 (+) True AMCG00014106
AMCG00014111 mRNA upstream 121911 1900462 ~ 1902687 (+) False AMCG00014111
AMCG00014103 mRNA upstream 145638 1872749 ~ 1878960 (+) True AMCG00014103
AMCG00014102 mRNA upstream 155156 1858678 ~ 1869442 (+) True AMCG00014102
AMCG00014120 mRNA downstream 54915 2083426 ~ 2113366 (+) True AMCG00014120
AMCG00014124 mRNA downstream 133246 2161757 ~ 2172540 (+) True AMCG00014124
AMCG00014122 mRNA downstream 151135 2179646 ~ 2195573 (+) True AMCG00014122
AMCG00014123 mRNA downstream 193104 2221615 ~ 2222904 (+) True AMCG00014123
AMCG00014121 mRNA downstream 211127 2239638 ~ 2253288 (+) True AMCG00014121
TU84682 other upstream 121983 1900220 ~ 1902615 (+) True AMCG00014111
TU84672 other upstream 143557 1879091 ~ 1881041 (+) True G67801
TU84663 other upstream 186473 1835432 ~ 1838125 (+) True AMCG00014104
TU84560 other upstream 540505 1483785 ~ 1484093 (+) False AMCG00014099
TU84388 other upstream 1917476 58449 ~ 107122 (+) True G67577
TU84815 other downstream 98361 2126872 ~ 2130145 (+) True G67896
TU84895 other downstream 678329 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other downstream 678329 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other downstream 678329 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other downstream 680513 2709024 ~ 2710329 (+) True AMCG00014146

Expression Profile