RNA id: AMCG00014115


Basic Information

Item Value
RNA id AMCG00014115
length 636
RNA type mRNA
GC content 0.64
exon number 6
gene id AMCG00014115
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2029590 ~ 2031527 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTACACAGTGTGCAGGCTGGAGAGCAGAAGTTCCCCAGCCCTGGACCAGTTCCTGCGGGCAGCTCCAGTAACGGGGGGCGTGGGCGAGTTCCTGATGAGGAAGATGGGCTGGCGAGAGGGCGAGGGCCTGGGCAAGAACCGCGAGGGCAACGTGGAGCCCATCTTGATTGACTTCAAGACCGACCGCAAGGGCTTGGTGGCCGAGGGGGAGAAGACCCAGAAGTCCGGGAGTCTGCACGTGATGAAGGACCTGCTAGGCAAGCACCCCGTGTCGGCTCTGATGGAGATGTGCAACAAGAGGAAGTGGTCACCCCCGGAGTTCGTCCTGGTGCACAACAGCGGCCCCGACCACCGCAAGAACTTCCTGTTCAAGGTGGTGATCAATGGCCGGGACTACCAGCCACACACGGCCAGCCCCAACAAGAAACACGCCAAGGCCATGGCCGCCACGGTGGCTCTGCAGGCCATGGGCGAGTGTTTTGTGCGTCGCACACACCAACGCAGAGGGCGGTCCGGCCTGCAGAGAGAGGACCCCTCCCGGCACGCCACGGAGCACACTCCAACACAGCGGCGCTCGGGACAGACACGCTGGACTGGGGGGCAGGGGGCGATTCCATCAGTTGCAGAGTAG

Function

GO: NA

KEGG:

id description
K23718 SON; protein SON

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84744 lncRNA downstream 87170 1942027 ~ 1942420 (-) True G67849
TU84715 lncRNA downstream 146640 1879203 ~ 1882950 (-) False AMCG00014108
TU84693 lncRNA downstream 207831 1820612 ~ 1821759 (-) False G67818
TU84694 lncRNA downstream 207831 1820612 ~ 1821759 (-) True G67818
TU84597 lncRNA downstream 463250 1564787 ~ 1566340 (-) False AMCG00014098
TU84795 lncRNA upstream 25322 2056849 ~ 2059491 (-) True G67881
TU84803 lncRNA upstream 54584 2086111 ~ 2087121 (-) False AMCG00014119
TU84811 lncRNA upstream 63540 2095067 ~ 2124907 (-) False AMCG00014119
TU84810 lncRNA upstream 63779 2095306 ~ 2095631 (-) False AMCG00014119
TU84833 lncRNA upstream 318598 2350125 ~ 2373329 (-) True G67911
AMCG00014110 mRNA downstream 114000 1906150 ~ 1915590 (-) True AMCG00014110
AMCG00014107 mRNA downstream 125857 1903416 ~ 1903733 (-) True AMCG00014107
AMCG00014109 mRNA downstream 130681 1895665 ~ 1898909 (-) True AMCG00014109
AMCG00014108 mRNA downstream 144158 1879208 ~ 1885432 (-) True AMCG00014108
AMCG00014105 mRNA downstream 156168 1870237 ~ 1873422 (-) True AMCG00014105
AMCG00014117 mRNA upstream 714 2032241 ~ 2032429 (-) True AMCG00014117
AMCG00014114 mRNA upstream 1185 2032712 ~ 2037821 (-) True AMCG00014114
AMCG00014116 mRNA upstream 6943 2038470 ~ 2046247 (-) True AMCG00014116
AMCG00014119 mRNA upstream 54414 2085941 ~ 2124953 (-) True AMCG00014119
AMCG00014118 mRNA upstream 120358 2151885 ~ 2154746 (-) True AMCG00014118
TU84738 other downstream 111408 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 126975 1900640 ~ 1902615 (-) True G67832
TU84719 other downstream 137037 1892063 ~ 1892553 (-) True G67835
TU84716 other downstream 146640 1879203 ~ 1882950 (-) False AMCG00014108
TU84711 other downstream 158436 1869850 ~ 1871154 (-) False AMCG00014105
TU84851 other upstream 508790 2540317 ~ 2542697 (-) False AMCG00014134
TU84998 other upstream 609532 2641059 ~ 2643907 (-) False AMCG00014144
TU85055 other upstream 794035 2825562 ~ 2829144 (-) True G68088
TU86038 other upstream 5346561 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 5386071 7417598 ~ 7423291 (-) False AMCG00014278

Expression Profile