RNA id: AMCG00014119


Basic Information

Item Value
RNA id AMCG00014119
length 1350
RNA type mRNA
GC content 0.54
exon number 11
gene id AMCG00014119
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2085941 ~ 2124953 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCTCCTCCGGCTCCACGCGTCTCTGAGGTCTCCGGTCACAAAGCAGGGACGGGCCCCCAGGGTGCTGAACCCAGGGATCTTGGCATATTTTggtggggtcaggggtcaggccAAGGAGACACAAGGATTGGAGGGAGGGAATCACGTGGCAGGGGTTAGTGATTACGATTTCGCCCGCTCTGCCACCAGGTGGGGCTGCAGCCACAGAGATGTGCAGGAGGGCTTCACGCTGGCTCAGACTCCGCCCAGACACAGCACTTATTTAACACTGGACGGACAGAGAGAACCCCCAACAGACGACGATGACAAGAACCTTCGTCTGGTTCTCTCTCAGTTCTACATACAGACCCCACCCTCAGTGACTGTTGATCGGGGAGGATCAGTCAGATTAAGTTGCTATATTCGCAGAGAAGCTTCAGTCAGCACCCTGACCTGGATCAAGCAAGAACCGGGTAATCCTCCGAGACCCATAGGATCATGGGAAAACAATGCGGATTCACTACAGGATGAGTTTAAGAACAGCAGTCGCTTTGCAATAGAAAGAAGCGGTGATGACTTTGACCTTAAAATATCCAGCACTGAACGGTCAGATGTTGGCAGATACTTCTGTGCAGCAGCTCAATCCAGATCTGTGCGTTTTGGTCAAGGAACTGTAATACAAATGAAAGATCTAGACCCAGAGTCCATCAGCAGGAGAGCAGTGCAGCCGCCTGTGTCTGTCCCCGTCCAGCCAGGAGACAATGTGACCTTGCAGTGTGTGATAGATTATTACACCTGTAAAGCAGAGCACAGTGTCGATTGGTTcaggcacagatcaggagaaTCCCTTTCAGGATTAAAAACCCATAACAACTGGATTGATCAGTGTGACCGCAGTGAGGCAGGAGGCAGTGCGGAGAGCCCATGTGGCTGCGGGGGCCACAGTGCGCTCTCTCTCAGTGTCCTGGCTCTGGCTgcagtgctctgtgtgtttgggACGCTCGTCACAGCGCTGCTGTGCAGGAGACACAGAGCAGAAGCAGCTTCTGGACGTCCTCCTCACAGTGACCAACACTGCAGCCCTGCCCACggcacagacacagagtcacAGTTGTTTGTCCTCCTGTACATTAGAGGGAGACACCCAGGCCTCAGCCCCCTCACCAAGATCCACTCAACTCGTGAGATCTGTGAAAGGGATGGCCAGTGGTCTCTGCTCACACTGTCCCACAGGGTCCTGTCGACCTCCTCCTATCGGGATGGATGCAGCGTCAGACGTTGCCAGATACTACTGTGGAGCAATCAGGGACACAACAGTGAGATTCGGATCTGGAACTTCAATACGACTGAAAGtttgccCAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84795 lncRNA downstream 26450 2056849 ~ 2059491 (-) True G67881
TU84744 lncRNA downstream 143521 1942027 ~ 1942420 (-) True G67849
TU84715 lncRNA downstream 202991 1879203 ~ 1882950 (-) False AMCG00014108
TU84693 lncRNA downstream 264182 1820612 ~ 1821759 (-) False G67818
TU84694 lncRNA downstream 264182 1820612 ~ 1821759 (-) True G67818
TU84833 lncRNA upstream 225172 2350125 ~ 2373329 (-) True G67911
TU84881 lncRNA upstream 483316 2608269 ~ 2608479 (-) True G67953
TU85010 lncRNA upstream 571855 2696808 ~ 2701159 (-) True G68057
TU85014 lncRNA upstream 582864 2707817 ~ 2710329 (-) True G68061
TU85029 lncRNA upstream 633532 2758485 ~ 2758840 (-) True G68070
AMCG00014116 mRNA downstream 39694 2038470 ~ 2046247 (-) True AMCG00014116
AMCG00014114 mRNA downstream 48120 2032712 ~ 2037821 (-) True AMCG00014114
AMCG00014117 mRNA downstream 53512 2032241 ~ 2032429 (-) True AMCG00014117
AMCG00014115 mRNA downstream 54414 2029590 ~ 2031527 (-) True AMCG00014115
AMCG00014110 mRNA downstream 170351 1906150 ~ 1915590 (-) True AMCG00014110
AMCG00014118 mRNA upstream 26932 2151885 ~ 2154746 (-) True AMCG00014118
AMCG00014133 mRNA upstream 51866 2176819 ~ 2177304 (-) True AMCG00014133
AMCG00014136 mRNA upstream 143564 2268517 ~ 2278983 (-) True AMCG00014136
AMCG00014138 mRNA upstream 200149 2325102 ~ 2339187 (-) True AMCG00014138
AMCG00014134 mRNA upstream 407001 2531954 ~ 2540358 (-) True AMCG00014134
TU84738 other downstream 167759 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 183326 1900640 ~ 1902615 (-) True G67832
TU84719 other downstream 193388 1892063 ~ 1892553 (-) True G67835
TU84716 other downstream 202991 1879203 ~ 1882950 (-) False AMCG00014108
TU84711 other downstream 214787 1869850 ~ 1871154 (-) False AMCG00014105
TU84851 other upstream 415364 2540317 ~ 2542697 (-) False AMCG00014134
TU84998 other upstream 516106 2641059 ~ 2643907 (-) False AMCG00014144
TU85055 other upstream 700609 2825562 ~ 2829144 (-) True G68088
TU86038 other upstream 5253135 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 5292645 7417598 ~ 7423291 (-) False AMCG00014278

Expression Profile