RNA id: AMCG00014121


Basic Information

Item Value
RNA id AMCG00014121
length 1557
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00014121
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2239638 ~ 2253288 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCATTGAAGCGTCAATATGAACAGAATCACAAAGAAAACGCCTCTGAGGATCCAGAAACGAATCAAAGTATCAAAGAAGGAAACAAAGGAAAGGTCAGCCACCACTGCTGGAGAACAGCCATGGCTGATACAAACTACACAGGATCAATGGTCAGTGAATTCATTATTGCTGGTTTCCCTGGactgcaggacagagagagcaagGCCATCCTGTTTGCTGTGTTCCTGACAGTCTACCTCCTCATTTTACTGGGGAATCTTCTCCTTATTTGCATACTGGCTGCAGACACAAGCTTGCACACCCCCATGTACCTGACAATATGTAGTCTGTCCATTATTGACATCACAATTTGTACATCACTTGTACCTACTATGCTATCTGTCTTCAGTTCAACTACTTACACTGTCTCCTTCTCAGCATGCTTTACCCAGACCTACTTCTTTATGGCTCTGCCATCTATAGAAAGCTTTATCTTGCTGCTCATGGCTTATGACAGGTATGTGGCCATCTGCCACCCACTCCACTACCCAGTCAGGATGACGGTTAGGTTCACTTTGCAACTCATAGTTGTTTGTTGGCTGGGAGGGTTCCTGTGCCCAGTCCTTGTGTTTAGTCTGGCATTCACAAAGCGGTTCTGTGGACCCAATAGAGTCCTGCAATGCTTCTGTGATTATTCAGGAGTTCTACGCCTGGCCTGTGGAGATGTTCTCTCAATCAGCTATGTTagcttattttctgtgttgagtATTCTTCTCAtccctctgtttttcattgtgctGTCCTATGTGAAGATCCTTCTGTCAGTATTGCGTATCTCCAGCTCAGCGGGAAGAGCCAAGGCCGTGTCCACCTGCAGCTCACACCTGCTGGTCATCTCTGTGTTCTATTTCACGTCTGCAGGAGTCTATATCTCCTACAGGATTCCTGGGACCTCAGTGGACATGCGTATCATGGGGTCTGTGATTTTGATTGTCTTCCCTGCCCTCATGAATCCGATAATCTACTGTCTGAGGACTAAAGAGATCAGGGACAGCTTGGTGAAAACCCTGAAAAATAGGTTCCTGTGCCCAACCCTTGTGTTTAGTTTGGCATTCACAAAGCAGTTCTGTGGACCCAATAGAGTTCCGCTGTGCTACTGTGATTATGCTGGAGTGCTACGCCTGGCCTGTGGAGATGTTCTCTCAATCAGCCACTTTagcttattttctgtgttgagtATTCTTCTCAtccctctgtttttcattgtgctGTCCTATGTGAAGATCCTTCTGTCAGTATTACGTATCTCCAGCTCAGCGGGAACAGCCAAGGCCGTGTCCACCTGCAGCTCACACCTGCTGGTCCTCTCTGTGTTCTATTTCACGTCTGCAGGAGTCTATATCTCCTACAGGATTCCTGGGACCTCAGTGGACATGCGTGTTATGGGGTCTGTGATTCAGCATGTCTTCCCTGCCCTCATGAATCCGATAATCTACTGCCTGAGGACTAAAGAGATCAGGGACAGCTTGGTGAAAACCCTGAAAAATAGCAAAATCTTCCCAGGTAGCAAGTAA

Function

GO: NA

KEGG:

id description
K04257 OLFR; olfactory receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84819 lncRNA upstream 90984 2148449 ~ 2148654 (+) True G67899
TU84797 lncRNA upstream 162036 2077303 ~ 2077602 (+) True G67882
TU84650 lncRNA upstream 397193 1840165 ~ 1842445 (+) True G67789
TU84655 lncRNA upstream 417880 1820573 ~ 1821758 (+) True G67792
TU84544 lncRNA upstream 963422 1275991 ~ 1276216 (+) True G67699
TU84829 lncRNA downstream 80203 2333491 ~ 2333944 (+) True G67907
TU84830 lncRNA downstream 96841 2350129 ~ 2373305 (+) True G67908
TU84919 lncRNA downstream 492956 2746244 ~ 2755484 (+) True G67983
TU84927 lncRNA downstream 514214 2767502 ~ 2768837 (+) True G67988
TU84933 lncRNA downstream 529051 2782339 ~ 2802044 (+) True G67994
AMCG00014123 mRNA upstream 16734 2221615 ~ 2222904 (+) True AMCG00014123
AMCG00014122 mRNA upstream 44065 2179646 ~ 2195573 (+) True AMCG00014122
AMCG00014124 mRNA upstream 67098 2161757 ~ 2172540 (+) True AMCG00014124
AMCG00014120 mRNA upstream 126272 2083426 ~ 2113366 (+) True AMCG00014120
AMCG00014113 mRNA upstream 211127 2024598 ~ 2028511 (+) True AMCG00014113
AMCG00014125 mRNA downstream 23421 2276709 ~ 2325390 (+) True AMCG00014125
AMCG00014139 mRNA downstream 124946 2378234 ~ 2389212 (+) True AMCG00014139
AMCG00014129 mRNA downstream 147130 2400418 ~ 2401353 (+) True AMCG00014129
AMCG00014127 mRNA downstream 161274 2414562 ~ 2422277 (+) True AMCG00014127
AMCG00014140 mRNA downstream 181529 2434817 ~ 2438719 (+) True AMCG00014140
TU84815 other upstream 109493 2126872 ~ 2130145 (+) True G67896
TU84682 other upstream 337023 1900220 ~ 1902615 (+) True AMCG00014111
TU84672 other upstream 358597 1879091 ~ 1881041 (+) True G67801
TU84663 other upstream 401513 1835432 ~ 1838125 (+) True AMCG00014104
TU84560 other upstream 755545 1483785 ~ 1484093 (+) False AMCG00014099
TU84895 other downstream 453552 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other downstream 453552 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other downstream 453552 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other downstream 455736 2709024 ~ 2710329 (+) True AMCG00014146
TU85565 other downstream 2395912 4649200 ~ 4651964 (+) True G68475

Expression Profile