RNA id: AMCG00014126


Basic Information

Item Value
RNA id AMCG00014126
length 1176
RNA type mRNA
GC content 0.63
exon number 2
gene id AMCG00014126
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2558599 ~ 2561177 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCAGAAGCCTGAGTACTCTACAAGTTCCCTCAATGGCTGGTATTGGGACCACTAGTGGGTCAGAGGCCTTCTCCTTGCTGCAGCCCGGAGCCCTCAACACCTCGGCACCTACGGTCAACACCAACAACACCGCTGTGCACAGCATGGGGTCTGAGGCGTCACGCGTGGCCCAGATGATCATCACCATCCTGATCTTCCTGGTCGGCATCCCCCTGAACCTGCTGGTGGTGTGGGTGCTGGGCGTGCGCGGTTGGCGGCGGGAGGGCAAGAGGGCGAGCAACAGCAGCTTCGGCGTGTACGTGGTGAACCTGGCGCTGGCGGACCTGGTACTGGTAATGAGGACCCCCCTGGCACTGGGCTACCTGGCTAACCACTTCCACTGGCCCTTCGGTCTGCCCGCCTGTCGCCTGGTGATGTTCTTGCGCGTACTGGGGCTCTACGCCAACGCCTTCCTGCTGTGCGCCATCAGCATGGAGAGGTGCCTGTGCCTACTGCGTCCCGTGTGGTACCGCCTGCGCCGCCGGCCCTGGGTGGTCCACCTGGTGTGTGGCCTGCTCTGGGTGCTGGCCTTCTCCCTCAGCACCCCCTACATCGCCACCAGCCAGATAAAGTCTATCAACAGCCGCAGCCAGTGCATGCCGAGCGGAAAGCTCAGGCTGGCTCTGTTCATCACCGAGACCCTGCTGGGCTTCCTGCTGCCACTGCTGCTCTTCCTCTCCTGCAATCTGGCCGTGCTGCTCACCGCCCGGCAGGTAGAGGGTGCTAGCGCCGCACGGGCCTCCATCTCCACCCTTGCTACCTCTTCCTCCGCctcctcttccccctccccctcctctcagCGCTACACCAGGCTCTACAGAGTGCTCTTCCTCACCATGCTGCTCTTCCTCACCTGCTGGGTGCCATACTTCACCTTCCGCTTCCTGGGGAAGCTGTCGGAGTACTGGCAGAACCAGAGTCTGACTAAGGTGTTCTATCGAGGGGAGTACACCTCTCTGTACCTGGTGTACCTTAAGAGTGCACTGAACCCCGTGCTGTACGTGTTCGCAGGGAAGGGGCTGGGCGGCGCTGTCAAGGCCTCACTGCTGTCCGCAGTCGAGCGCATCTTTAACGAGGACACGTCTGACTACAGCCGTAGGCGCTCTCTCCGGGGCCGGGACTCGCTGGTGTAG

Function

GO:

id name namespace
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84830 lncRNA upstream 185294 2350129 ~ 2373305 (+) True G67908
TU84829 lncRNA upstream 224655 2333491 ~ 2333944 (+) True G67907
TU84819 lncRNA upstream 409945 2148449 ~ 2148654 (+) True G67899
TU84797 lncRNA upstream 480997 2077303 ~ 2077602 (+) True G67882
TU84650 lncRNA upstream 716154 1840165 ~ 1842445 (+) True G67789
TU84919 lncRNA downstream 185067 2746244 ~ 2755484 (+) True G67983
TU84927 lncRNA downstream 206325 2767502 ~ 2768837 (+) True G67988
TU84933 lncRNA downstream 221162 2782339 ~ 2802044 (+) True G67994
TU84941 lncRNA downstream 231565 2792742 ~ 2797809 (+) True G67997
TU84995 lncRNA downstream 415037 2976214 ~ 2976510 (+) True G68046
AMCG00014130 mRNA upstream 2031 2549354 ~ 2556568 (+) True AMCG00014130
AMCG00014128 mRNA upstream 16201 2539703 ~ 2542398 (+) True AMCG00014128
AMCG00014137 mRNA upstream 61452 2486625 ~ 2497147 (+) True AMCG00014137
AMCG00014135 mRNA upstream 104043 2451049 ~ 2454556 (+) True AMCG00014135
AMCG00014140 mRNA upstream 119880 2434817 ~ 2438719 (+) True AMCG00014140
AMCG00014146 mRNA downstream 146638 2707815 ~ 2710329 (+) False AMCG00014146
AMCG00014147 mRNA downstream 214201 2775378 ~ 2778596 (+) True AMCG00014147
AMCG00014148 mRNA downstream 227418 2788595 ~ 2790836 (+) True AMCG00014148
AMCG00014149 mRNA downstream 258365 2819542 ~ 2821456 (+) True AMCG00014149
AMCG00014161 mRNA downstream 348252 2909429 ~ 2915164 (+) True AMCG00014161
TU84815 other upstream 428454 2126872 ~ 2130145 (+) True G67896
TU84682 other upstream 655984 1900220 ~ 1902615 (+) True AMCG00014111
TU84672 other upstream 677558 1879091 ~ 1881041 (+) True G67801
TU84663 other upstream 720474 1835432 ~ 1838125 (+) True AMCG00014104
TU84560 other upstream 1074506 1483785 ~ 1484093 (+) False AMCG00014099
TU84895 other downstream 145663 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other downstream 145663 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other downstream 145663 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other downstream 147847 2709024 ~ 2710329 (+) True AMCG00014146
TU85565 other downstream 2088023 4649200 ~ 4651964 (+) True G68475

Expression Profile