RNA id: AMCG00014135


Basic Information

Item Value
RNA id AMCG00014135
length 1854
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00014135
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2451049 ~ 2454556 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gacagagagagcaagGCCATCCTGTTTGCTGTGTTCCTGACAGTCTACCTCCTCATTCTACTGGGCAATTTTCTCCTTATTACCATACTGGCTGCAGACACAAGCTTGCACACCCCCATGTACCTGACAATATGTAGTTTGGCCATTATTGACATCAGCCTTTCTACATGCACTGTACCCACTATGCTAGCTGTCTTCAGTTCTACTACTCACACTGTCTCCTTCTCAGCATGCTTCACCCAGACCTATTTCTTTCTGGCTCTGTTGACTACAGAAAGCTTTATCTTGCTGCTCATGTATGTGGCCATCTGTCACCCACTCCACCACCCAGCCAGGATTACCATTAGGTTCACTTTGAAACTCATAGTTGTTTGTTGGCTGGGAGGGTTCCTGTGCCCAATCCTTACATTAATTCTAGCACTTACAAAGCGGTTCTGTGGACCCAATAGAGTTCTGCAATGTTACTGTGATTATTCAGGAGTGCTGCGCCTGGCCTGTGGAGATGTTCTCTCTATCAGCTACGTTAGTTTATTTGTTGGACTGAGTGTTCTTCTCATCCCTCTGTTTCTCATCCTGTTGTCCTATGTGAAGATCCTTCTGTCAGTATTGTGTATGTCTAGCTCAGGGGGAAGAGCCAAGGCCGTGTCCACCTGCAGTTCACACCTGCTGGTCCTTTCTGTGTTCTACCTCACTACAGCAGGGGTCTTCACCTCCTACAGGATTACTGGGACCTCAGTGGACATGCGTGTTATGGGGTCTGTGATTCAGAATGTCTTCCCTGCCCTCATTAATCCAATTATCTATTGCCTGAGGACTAAAGACATCAGGGACAGCTTGGTGAAAACACGGAGAAAGAGCAGTGTCTTCCCAGGTAGGAAGATCAGATCTCATCATTTCTGGTGTACAGCCATGGCTGATACAAACTACACGGGATCAATGGTCAGTGAATTCATTATTGTTGGTTTCCCTGGactgcaggacagagagagcaagACCATCCTGTTTGCTGTGTTCCTGACAGTCTACCTCCTCATTTTACTGGGGAATCTTCTCCTTATTTGCATACTGGCAGCAGACACAAGCTTGCACACCCCCATGTACCTGACAATATGTAGTTTAGCAATTATTGACATCAGCCTTTCTACATGCACTGTACCCACTATGCTAGCTGTCTTCAGTTCTACTACTCACACTGTCTCCTTCTCAGCATGCTTCACCCAGACctatttatttctgtctctcttgaCTACAGAAAGCTTTAATTTACTGCTCATGGCTTATGACAGGTATGTGGCCATCTGTCACCCACTCCACTACCCAGCCAGGATGACTATTATGTTCACTTTGCAACTCGTAGTTGTTTGTTGGCTGGGAGGGTTTCTTTGCCCAATCCTTTCTTTAATTCTGGCACTCACAAAGCGGTTCTGTGGACCCAATAGAGTTCTGCAATGCTTCTGTGATTATGCTGGAGTGCTCCGCCTGGCCTGTGGAGATGTTCTCTCAACCAGCTATGTTAGTTTATCTGTTGCACTGAGTGTTCTTCTCATCCCTCTGTTTCTCATCCTGTTGTCCTATGTGAAGATCCTTCTGTCATTATTGCGTATGTCTAGCTCAGGGGGAAGAGCTAAGGCCATCTCTACCTGCAGCTCACACCTGCTGGTCATCTCTGTGTTCTTCCTCACGACAGCAGGGGTCTTCATCTCCTACAGGATTCCTGGGACCTCAGTGGACATGCGTGTTATGGGGTCTGTGACTCAGAATGTCTTTCCTGCCCTCATGAATCCAATTATCTATTGCCTGAGGACTAAAGAGATCAGGGACAGCTTGGTGAAAACCCTGAGAAAGTATCTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84830 lncRNA upstream 77744 2350129 ~ 2373305 (+) True G67908
TU84829 lncRNA upstream 117105 2333491 ~ 2333944 (+) True G67907
TU84819 lncRNA upstream 302395 2148449 ~ 2148654 (+) True G67899
TU84797 lncRNA upstream 373447 2077303 ~ 2077602 (+) True G67882
TU84650 lncRNA upstream 608604 1840165 ~ 1842445 (+) True G67789
TU84919 lncRNA downstream 291688 2746244 ~ 2755484 (+) True G67983
TU84927 lncRNA downstream 312946 2767502 ~ 2768837 (+) True G67988
TU84933 lncRNA downstream 327783 2782339 ~ 2802044 (+) True G67994
TU84941 lncRNA downstream 338186 2792742 ~ 2797809 (+) True G67997
TU84995 lncRNA downstream 521658 2976214 ~ 2976510 (+) True G68046
AMCG00014140 mRNA upstream 12330 2434817 ~ 2438719 (+) True AMCG00014140
AMCG00014127 mRNA upstream 28772 2414562 ~ 2422277 (+) True AMCG00014127
AMCG00014129 mRNA upstream 49696 2400418 ~ 2401353 (+) True AMCG00014129
AMCG00014139 mRNA upstream 61837 2378234 ~ 2389212 (+) True AMCG00014139
AMCG00014125 mRNA upstream 125659 2276709 ~ 2325390 (+) True AMCG00014125
AMCG00014137 mRNA downstream 32069 2486625 ~ 2497147 (+) True AMCG00014137
AMCG00014128 mRNA downstream 85147 2539703 ~ 2542398 (+) True AMCG00014128
AMCG00014130 mRNA downstream 94798 2549354 ~ 2556568 (+) True AMCG00014130
AMCG00014126 mRNA downstream 104043 2558599 ~ 2561177 (+) True AMCG00014126
AMCG00014146 mRNA downstream 253259 2707815 ~ 2710329 (+) False AMCG00014146
TU84815 other upstream 320904 2126872 ~ 2130145 (+) True G67896
TU84682 other upstream 548434 1900220 ~ 1902615 (+) True AMCG00014111
TU84672 other upstream 570008 1879091 ~ 1881041 (+) True G67801
TU84663 other upstream 612924 1835432 ~ 1838125 (+) True AMCG00014104
TU84560 other upstream 966956 1483785 ~ 1484093 (+) False AMCG00014099
TU84895 other downstream 252284 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other downstream 252284 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other downstream 252284 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other downstream 254468 2709024 ~ 2710329 (+) True AMCG00014146
TU85565 other downstream 2194644 4649200 ~ 4651964 (+) True G68475

Expression Profile