RNA id: AMCG00014149


Basic Information

Item Value
RNA id AMCG00014149
length 921
RNA type mRNA
GC content 0.63
exon number 5
gene id AMCG00014149
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2819542 ~ 2821456 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTCTGATCTGGAGAGCCATGCTGCTGCTGGGCTGCGTGGACTGCTGCCTATCCACAGGACAGCCCTGTGTTGTGGGGGTTGTTGGGGGATGGGCGACGCTGCCTTGTGTGGATCACCATGCAGAGGACCTGGAGATGGGGAATGGCACCGTTGAGTGGAGGAGCAGCCAGGGCGCCATGGTGCACAGCTCAGTGTCGGGAGAGGAGCCCCCCTACAGCGGGAGAGCCCAGCTGCTCGCTGCGGACCGCCGCTCCGGAGACCTGTCCCTCCGGCTCTCCAGCATCACCCTGGCAGACGCGCAGGACTACCACTGCTACCGCAGCACCGCCGGGCAGCAGACAGCAGAGCGGCTGTGCCGGGTGTGTCTGACTGCAGCAGCCCGTTACTCAGAGCCAGAGCTGCACAGAGTCCCAGTCCCAGAGGGAGGAGACGCCCAGTTCAGCTGCTCCTCCTCGGGGGGCTTTCCTGAGCCCAGGGTCCACTGGCTGCTTAACTCACAGCGCCCCCctgtggacacagagaggacacaCCACACTCAGGACCCTGTCACTGGGCTGGTCAGTGTCTCCAGCCGCCTCACAGTCAGTGTCCACTCCACACAGGACATCTCTGTGAGCTGCACCATTGAAAACCCCCGACTCAACGAGAGCAGGAGCTCATCAGAGAGGAGCTaCAGCGTTCAGGCCCATGGCTTGGGGGTGAAGTGGGTGTTCAGCGCGGCACTGTGTGTGGCTGTGGCTGTCATGGTGGCAGCGACCCTGTGCTATCAGATCAGCCTGGACAGGAAGTCCATGAGGAAGTCGCGGACATGGACAGAGGAGTTGAAGGGCGGTGGCAGCAGTGGCAGCCtggaggagtggggggggatGATGGTGGACACAGAGCTGCTGGACAGTCTGACCGAGACGGACGTGTAG

Function

GO:

id name namespace
GO:0004953 icosanoid receptor activity molecular_function
GO:0004954 prostanoid receptor activity molecular_function
GO:0004955 prostaglandin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84933 lncRNA upstream 17498 2782339 ~ 2802044 (+) True G67994
TU84941 lncRNA upstream 21733 2792742 ~ 2797809 (+) True G67997
TU84927 lncRNA upstream 50705 2767502 ~ 2768837 (+) True G67988
TU84919 lncRNA upstream 64058 2746244 ~ 2755484 (+) True G67983
TU84830 lncRNA upstream 446237 2350129 ~ 2373305 (+) True G67908
TU84995 lncRNA downstream 154758 2976214 ~ 2976510 (+) True G68046
TU85148 lncRNA downstream 403118 3224574 ~ 3226499 (+) True G68151
TU85150 lncRNA downstream 405403 3226859 ~ 3228126 (+) True G68153
TU85167 lncRNA downstream 553381 3374837 ~ 3375148 (+) True G68166
TU85168 lncRNA downstream 554129 3375585 ~ 3375789 (+) True G68167
AMCG00014148 mRNA upstream 28706 2788595 ~ 2790836 (+) True AMCG00014148
AMCG00014147 mRNA upstream 40946 2775378 ~ 2778596 (+) True AMCG00014147
AMCG00014146 mRNA upstream 109213 2707815 ~ 2710329 (+) False AMCG00014146
AMCG00014126 mRNA upstream 258365 2558599 ~ 2561177 (+) True AMCG00014126
AMCG00014130 mRNA upstream 262974 2549354 ~ 2556568 (+) True AMCG00014130
AMCG00014161 mRNA downstream 87973 2909429 ~ 2915164 (+) True AMCG00014161
AMCG00014152 mRNA downstream 101944 2923400 ~ 2928310 (+) True AMCG00014152
AMCG00014163 mRNA downstream 174989 2996445 ~ 3030703 (+) True AMCG00014163
AMCG00014162 mRNA downstream 222882 3044338 ~ 3044745 (+) True AMCG00014162
AMCG00014164 mRNA downstream 328439 3149895 ~ 3166217 (+) True AMCG00014164
TU84895 other upstream 109213 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 109213 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 109213 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 109213 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 689397 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1827744 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1827744 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 4524739 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 4592184 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 7181602 10003058 ~ 10008648 (+) True G69406

Expression Profile