RNA id: AMCG00014158


Basic Information

Item Value
RNA id AMCG00014158
length 1047
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00014158
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2945902 ~ 2952055 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCTGTGACCTTACGCTAATACTGGAGTCGCTGCAGGCACAGAAGTCAAGGAACcgaattaataatgcatttctgcTGACTGACAAAACCCTGCAGTTCGTTGACATTCCTCCCACACTGGCAGCTCCTGTCGAACCATCCACCCAGCCCTGGCTCATCGCGTTCGGGGTGGTCATTAGCTTGGTGATGGTGGCCATTGTTGCTCTCGTTATATCTGGAATGGTACAGAAACAACGGAAAGAAAAGGGCATGattgaagaggaggaggatgaggaggaaaaGCAAGATAAAGTGGTTGAAAACGGCATCATCTATGAAGTGATGGACACAGACAAAGGAGCTGACAACAGAGGTTTTGCGGAGGATGATGACAGATTCACACGACTATAGAGACTCCATGGCTGAGGAAATGTACCCTGGAGTACAACGCAGTCACACTAAATGCTGTACAGTATTTCACTGTCAGAAAAGCTTCACGTGGTCACCTGTGGTAGAACTTGTCCCGAGTGCTAGGCTGACGGTTCAACTATAAAGGCTTGGCTAGACACTTCATAGCTTTAATTTTTCACAGATGTTAATAGCACATAAAATGCATCAAAGGATTACGGATTTCGTggaagtgtgttttgtttcactttgtttGCTATAATAATACGTTTATCCATCTGTACCAGTAATCACCGCACACCCatatctgttttgttgtttatttcccaAGATTCACATTTCgatgtctttgttttgtaattttgtacatGAGTTCaccaacattttacaatcatatttttatgtaaattgtgaAATATCCCATTGTATCTCTACAGTTTAAAGATGGTTTTTAGCAATATGAACCATCAGTCATCgagagagaaaagcaaacaaaaccttTATTGTCTTTCATTATGGAGCAGcagttaaatatgaattaaatgaatTCAGGGTGGAATAATAGATATTCTTACACTTCTTACACATGCAGCTGCAAGAACCTAAAGCAATGTGTTTGTAGCAACAGTGGACTgtatgcaattaaattaataaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85038 lncRNA downstream 140738 2776259 ~ 2805164 (-) True G68077
TU85041 lncRNA downstream 143858 2782510 ~ 2802044 (-) False G68078
TU85040 lncRNA downstream 160489 2782510 ~ 2785413 (-) True G68078
TU85037 lncRNA downstream 175242 2769838 ~ 2770660 (-) True G68076
TU85032 lncRNA downstream 179728 2765190 ~ 2766174 (-) False G68073
TU85111 lncRNA upstream 77054 3029109 ~ 3032764 (-) True G68124
TU85159 lncRNA upstream 274810 3226865 ~ 3228150 (-) True G68162
TU85184 lncRNA upstream 438933 3390988 ~ 3391380 (-) False AMCG00014181
TU85251 lncRNA upstream 511380 3463435 ~ 3464792 (-) True G68224
TU85344 lncRNA upstream 1004947 3957002 ~ 3957266 (-) True G68304
AMCG00014159 mRNA downstream 5069 2938547 ~ 2940833 (-) True AMCG00014159
AMCG00014160 mRNA downstream 8031 2935605 ~ 2937871 (-) True AMCG00014160
AMCG00014157 mRNA downstream 10750 2930614 ~ 2935152 (-) True AMCG00014157
AMCG00014154 mRNA downstream 41215 2893854 ~ 2904687 (-) True AMCG00014154
AMCG00014156 mRNA downstream 53680 2880514 ~ 2892222 (-) True AMCG00014156
AMCG00014169 mRNA upstream 232922 3184977 ~ 3195114 (-) True AMCG00014169
AMCG00014167 mRNA upstream 277125 3229180 ~ 3237028 (-) True AMCG00014167
AMCG00014168 mRNA upstream 298262 3250317 ~ 3251847 (-) True AMCG00014168
AMCG00014172 mRNA upstream 420243 3372298 ~ 3375153 (-) True AMCG00014172
AMCG00014181 mRNA upstream 433702 3385757 ~ 3394754 (-) True AMCG00014181
TU85055 other downstream 116758 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 301995 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 403205 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 1027720 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 1043287 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 4426033 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 4465543 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 5185276 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 5204174 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 5431230 8383285 ~ 8384224 (-) True G69156

Expression Profile