RNA id: AMCG00014161



Basic Information


Item Value
RNA id AMCG00014161
length 453
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00014161
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2909429 ~ 2915164 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAAATAGCTCTTGTCAGTTCAGTAGAAAAGAGTGGGAAAGACTCATTGAAAATAGTGGTGGCCCTGTACAGCTACACAAGTCAGATGGCCCGTGAGCTCAGCCTAGTAAAAGGGGAAAAGTACTATGTTCTAGAGGAAGACAGTGCAGAATGGTGGAAAGTGAGAGACACGTATGGGAAGGAAGGCTTTGCTCCCACTGCCTATATACGAGAGAAAAGCCTTAATCCCGTGGAAAAAAATGGGACAGTCCGCCATTACCTTATAAACGTTACCGCAGACAAGCAGTATTTCATTGCGGAAAATCACCTGTTTGACTCTGTTCCGAAACTAATTCAGTACCACCAGCACAATGCAGCAGGGATGGTGACTAGGCTACGTCATCCAGCTGTCATCAAAGACACCAAAGTACCTTCCTCAGCCAATGGTAATAACCGCTCGGTGGAGGTGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84933 lncRNA upstream 107385 2782339 ~ 2802044 (+) True G67994
TU84941 lncRNA upstream 111620 2792742 ~ 2797809 (+) True G67997
TU84927 lncRNA upstream 140592 2767502 ~ 2768837 (+) True G67988
TU84919 lncRNA upstream 153945 2746244 ~ 2755484 (+) True G67983
TU84830 lncRNA upstream 536124 2350129 ~ 2373305 (+) True G67908
TU84995 lncRNA downstream 61050 2976214 ~ 2976510 (+) True G68046
TU85148 lncRNA downstream 309410 3224574 ~ 3226499 (+) True G68151
TU85150 lncRNA downstream 311695 3226859 ~ 3228126 (+) True G68153
TU85167 lncRNA downstream 459673 3374837 ~ 3375148 (+) True G68166
TU85168 lncRNA downstream 460421 3375585 ~ 3375789 (+) True G68167
AMCG00014149 mRNA upstream 87973 2819542 ~ 2821456 (+) True AMCG00014149
AMCG00014148 mRNA upstream 118593 2788595 ~ 2790836 (+) True AMCG00014148
AMCG00014147 mRNA upstream 130833 2775378 ~ 2778596 (+) True AMCG00014147
AMCG00014146 mRNA upstream 199100 2707815 ~ 2710329 (+) False AMCG00014146
AMCG00014126 mRNA upstream 348252 2558599 ~ 2561177 (+) True AMCG00014126
AMCG00014152 mRNA downstream 8236 2923400 ~ 2928310 (+) True AMCG00014152
AMCG00014163 mRNA downstream 81281 2996445 ~ 3030703 (+) True AMCG00014163
AMCG00014162 mRNA downstream 129174 3044338 ~ 3044745 (+) True AMCG00014162
AMCG00014164 mRNA downstream 234731 3149895 ~ 3166217 (+) True AMCG00014164
AMCG00014166 mRNA downstream 256670 3171834 ~ 3176055 (+) True AMCG00014166
TU84895 other upstream 199100 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 199100 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 199100 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 199100 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 779284 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1734036 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1734036 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 4431031 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 4498476 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 7087894 10003058 ~ 10008648 (+) True G69406

Expression Profile