RNA id: AMCG00014163


Basic Information

Item Value
RNA id AMCG00014163
length 2016
RNA type mRNA
GC content 0.55
exon number 20
gene id AMCG00014163
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2996445 ~ 3030703 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCAGAAAGGTGTAGTGTGTATAAATATCGGCTGCGTTAGaaaacaacattttagtCATATTTTGTCTGCGCTTTTCTTCCAGATCACAGAAGTGTGCGGAGCGAAGCGCCTGGGATATTTCAGTACTGCACACTTTTATGTCGCTCTGAAGTTATTGGCTGCAGCACAGTCGGGCCTCCCAGTGCACCTCGAAAGCATTAAAAGTGAACTGCCCCTTCCTAGATTTTTGGGGATGAAAAATGATACAGAGGTCAGGTTCCCAAACCATTCCCAAAACCCGCTGGACAGCCAGGGCCCTCCGTTTGGGACGCCCCCTGTGCCGATCCCCAGGGCGGCCCTCGACCGGATCTCCTTCAGACCCGTGGAGAACCCATCAGATAAACAAgaGCCATGGTCACCTCCACGTTCTCCACAGAGCTCCCCTCCCGACTCTCCACTGAGCTACCGCACCTACCCCTATAGCAAACAGCGAAACGGCAGCGAACCGCTGACAGCTtcctatgaaaacaaacacccagGGTGGCTGGGTCTACAGGAGAGTTCCTCCCCTGGTAGCTATGGATCCAGGTCTTCGCTGGGACACTCCTCCATGCCTCAGGCTCATCCGGTGCCGAGGGCCTCGGAGCAGAGCGCAGTGGATTACCCTGATGACCCCTGGAGGATCACGGAGGAACAGCGGGAATACTACACTAACCAGTTCAGGACCCTGCAGCCGGACCTCGGGGCTCTCATTCTGGgGACTGTTGCAAAGAATTTCTTTACAAAATCGAAGCTTTCGATTCCAGAGCTGTCCCACatttgGGAGCTGAGTGACGTCGACTGCGATGGTGCCCTGACTTTCCCAGAATTCTGTGCGGCCTTCCACCTCATCGTGGCTCGCAAAAATGGCTACCCTCTCCCAGAAGCACTGCCCCCGACCCTGATGCCTAGCTTTCTAGAAAAGGACATGGctCCCCAGCCCGGAGGTGAAGTGTTCTTTGGCTCATTTTCTGAGTCCGTGCCTTTAACCCAGCAACAGAAAGACCCGGCACCTGCCCAGAAGGCCGAGCCGCTGATCCTGTTTGAGGAAGCAGAGTCCCGGCCTGCACAGCCAGACTGCAGATTTGAGGAGAAGAACAAAGCTGAATCGATGCAGCCTACTCTGTCtgagaaaacaacatcaaaGCCAGATCTAAGGGATGTCAGCTCTGTGTCAGCCTTCAGTCCAAAGCGAATACCTGCCATTCAAGACGAGACAACCGAACGCCTTGACAGAGTTCCAGAAAAGCCAGATCCACCACAAGAGCTCGATCACCAGGTGAAGTCGAGAACAAGACCCAGGTCGTATTCGAGCACCTCGATTGACGATGCCATGAAGAAGACTGAGGAGCCCCCCACGCCACCTCCCAGACCCCAGAAGACCCACTCCCGAGCCTCGTCCCTGGACCTCAACAAGCTCTTTCAGCAGAGCAGTCAAGGCTTTAAAGGTGGCTGGCTGCCCCCccctcctgctcttcctccaAGACCCCTCGCCACCCAGATCCCCCATTTCATGCCCAGCACAGAGAGCGCACCAAAGCAAAGCCCAGTGCAGCAGCCTAACTTTGCGGACTTCAGCAAGTTCAGAGAAGAGGAGGAGAACACTGAGGATCGGGGTCCTCCCAGCAAGTCAGCCGTCAGCGCAGAAGAAGGCAGCCCTGCGAAAAAAGAGGGCATGCTGGCCCAGCCCCCACTGAAGCCAGTTCGCAGGAAATATCGTCCAGAGAGTCAGAATCTGGACTCCTCGGACCCTTCTGCCCCTCTGACATCTACCTCCTCTGGGCCTGGGACCAGGACCTCTCAAAAACAAGCCTCCAGGCAGAAGAAAGATATTCAGACAGCCATCCGGAAGAATAAAGAAGCCAACGCGGTCTTGACCCGACTCAACAGCGAGCTCCAACAGCAGCTAAAGCACAGTCTGAGAGATCCCCTGCCCCCCTCCTGGCACTGCCAGCTCCTTCACTCGCCCGTCTGCACAGTTCTCCTAATTTAG

Function

GO: NA

KEGG:

id description
K20068 REPS; RalBP1-associated Eps domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84995 lncRNA upstream 19935 2976214 ~ 2976510 (+) True G68046
TU84933 lncRNA upstream 194401 2782339 ~ 2802044 (+) True G67994
TU84941 lncRNA upstream 198636 2792742 ~ 2797809 (+) True G67997
TU84927 lncRNA upstream 227608 2767502 ~ 2768837 (+) True G67988
TU84919 lncRNA upstream 240961 2746244 ~ 2755484 (+) True G67983
TU85148 lncRNA downstream 193871 3224574 ~ 3226499 (+) True G68151
TU85150 lncRNA downstream 196156 3226859 ~ 3228126 (+) True G68153
TU85167 lncRNA downstream 344134 3374837 ~ 3375148 (+) True G68166
TU85168 lncRNA downstream 344882 3375585 ~ 3375789 (+) True G68167
TU85192 lncRNA downstream 380275 3410978 ~ 3483649 (+) True G68189
AMCG00014152 mRNA upstream 68135 2923400 ~ 2928310 (+) True AMCG00014152
AMCG00014161 mRNA upstream 81281 2909429 ~ 2915164 (+) True AMCG00014161
AMCG00014149 mRNA upstream 174989 2819542 ~ 2821456 (+) True AMCG00014149
AMCG00014148 mRNA upstream 205609 2788595 ~ 2790836 (+) True AMCG00014148
AMCG00014147 mRNA upstream 217849 2775378 ~ 2778596 (+) True AMCG00014147
AMCG00014162 mRNA downstream 13635 3044338 ~ 3044745 (+) True AMCG00014162
AMCG00014164 mRNA downstream 119192 3149895 ~ 3166217 (+) True AMCG00014164
AMCG00014166 mRNA downstream 141131 3171834 ~ 3176055 (+) True AMCG00014166
AMCG00014165 mRNA downstream 189500 3220203 ~ 3221921 (+) True AMCG00014165
AMCG00014171 mRNA downstream 308649 3339352 ~ 3370944 (+) True AMCG00014171
TU84895 other upstream 286116 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 286116 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 286116 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 286116 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 866300 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1618497 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1618497 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 4315492 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 4382937 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 6972355 10003058 ~ 10008648 (+) True G69406

Expression Profile