RNA id: AMCG00014164


Basic Information

Item Value
RNA id AMCG00014164
length 4472
RNA type mRNA
GC content 0.57
exon number 8
gene id AMCG00014164
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3149895 ~ 3166217 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTTGGCTAATGCCTGCGTTTTCCTCTCCTCAGCTGTCTCTAACCTGGACGTGGAGAGCAAGCTGACCGTGCACTACCAGGCCCCCTGGCACCAGCAGCGCAATGTGTTCCACCCTTCCACCCGGCCCCCCTGTGTCGAGGAGCTCCACCGACACGCCAAGCAGAACCTGCGGGCCCTGCACAGAGACCAACAGCAGAGACAGCGGGCGAACAGCAGGGAGCGCCGGGTGACAATCTCGATTTCCGTGGCACCTCCTATGCCCACCTTCCCCTCTCCGCGCACCCTCAGACGGCGGGAACAGCGAAGCAGGCACCTCCGAACGTTTGGCAGAACCCGCTCATCCTCCCCCACTCAGTGTTGCCACTTGACCCCCTGGAGCAGAAAGGCTATTCCCCTGACTGACCCCGACATCGATGTAGTCGCATTAGGTCACAGGCCGAAGTGTCCAGTGCCTAATATCCCGTCAACACTGGACAAGCAGACCAACTGGTCAAAAGCGCTACCTCTCCCAACGCCAGAGGAGAAAATGAGAACAGAGTCCCAAGTGATCTCGTCATGCATTATACCCATTAATGTCACTGGTAAATTTGCTGATTTTCTTGTCAGTACTACAGAGGAGACGGAAACTGAGAAGGAGAAAAACCATCTCCGGCATTCCCAGACGAGTGCAGCAAGAAATAGAGAACGCAACGTGATCGTGCACACCAATCCAGACTTCTCCCTGTGCCATGAAGAGTTGAATTCCCTCAATGGCCGGTCAACCACTAAGGACTCCGGGTGCCAGACAGATGACATCCTGATCACCGCGCCCTCTCGAAGGCGGATCCGAGCCCAGAGAGGTCAAGGCATCCCGAGCTCCCTCTCACACTCCACCGGCAACATCACATCCCTGCCGGACAACTCAGACACCATGTTTACAGCCTCGATGGGCAGCCGCCTCCGCTCGCGCAGCCTTCCCCGGGAGGGGGGACGAGTCGTGGACGAGGATCACGACAGCGACGAGGAGCTGTCTCCGTACGAGGCCGAGGAGTTCCTGCCTGGACCGGAGAGGGCCTTAAAGGACGAGGAAGAGAGCACAGATGACCAGGCCATGCCCGAACACCAGCTGGTCAGTCTCAAGTGCAAACAACACGTAGGAAGCCCAGACCACACCTGGAGTGAAAGAGGAAGATCCAGGCTTCCCCGGAAAGTGGACATGGGAAGCTGTGAGATTTCTTCCAGCTCAGATACATTCAGCAGCCCCATTCACTCCATCTCGACGACAGGAGTGCTTGGGAGCCAGATAGACCACAAGGAGGACCACCAGTCCTCCAGCGGCAACTGGAGTGGGAGCAGCTCCACGTGCCCCTCGCAGACGTCAGAGACCATCCCCCCTGCTGCTTCGCCTCCCCTGACAGGATCTTCACACTGTGATTCGGAGCTGTCGCTGAACACCGCTCCTCACGCCAACGATGACCCCACCGGCTTCATCATCGACCCGTACCCGACTGAAAAAGTCCGAGGCCACAGGGCGAGTTCCTTTACCTCCACGGTAACCGACCTGCTGGACGACCCCGGCATGAGCACCGTGAGCGACGGCGAGTGGAACTACCTGCATCATCAGCACGACAAATCCTGCTGTCAGGATTTCAGCCCCCAGCGCTCGAGGGAGGACGAGGGTGGCCTCGAATGCCCCAGCTTCACAAGCATGGCAACGTACGAAAGCTTTATGGACAAGCCGCCATCTGAGAAGGATTCGAGCTCCCACTACTCCGTGGACACAGAAGGCTACTATACCTCCATGCACTTTGACTGTGGTCTTAAAGCTAGCAAAAGCTATATTTATAACTATGCAGCCATGGGCCCTGATTGTGGCCAGAGCCTAAATGTTGCACCTAGCATGGGCGGATACCCTCAGCCAGACTACCAGGGTCACAGGACAACAGGGAGACAaagtctttcttttaaaaaaccAAAGGTGAAGCCAGCCCCACCAAAACGCAGTTCGTCattgaagaaaacaagcagTGGTGCAAATGTTGCTGACAAGAAAGAACCAAAGATAAACAGCGGGCAGCACCTGCCTTTGTCTTCCAGGGAAATGAAGCTGCAGCTGGACTTGGCCGGCTCCCCAGGCCAGTTGGACAACCCGACTCTAGGCGACGAGCCAGCCGAGCCCTGGGAGGTTCAGGCTGCTGGCGAGATGACAGACTCCACTTTGTTTGGCTCCACAGATAACCACTCCTTTAAGGATGAAGGTGCTGTACAGTCCGACTATGCAGATCTCTGGCTCCTCAATGACTTGAAGTCCAACGATCCCTATCGGTCGTTGTCCAACTCCAGCACTGCTACGGGTACAACTGTCATTGAGTGCATCAAGTCGCCAGAGAGCTCCGAATCCCAGACGTCCCAGTCGGGATCAAGGGCCACCACACCGTCTCTTCCTTCTGTGGAAAACGAGTTCAAGCTTGCCTCTCCCGAAAAGCTAGCCGGGTTGGCATCACCATCCAGCGGGTACTCCAGTCAATCAGAGACGCCAACATCTTCCTTCCCTTCGGCTTTCTTCCCCGGACCCCTGTCCCCGACAAGTGGAAAGAGGAAGCCAAAAGTCCCAGAGAGGAaatcttctctctcttccctgcagcagcagcagcatcccTCCAGAGATGGAAGCACCTCATCCAAGAGAGACCTTGAGCTACCGATTATACCTCCAACCCATCTTGACCTAAGTGCTCTTCACAACGTTCTCAACAAGCCTTCAGCCCACAGAAACCAGATGCACATTCTCCATCAGAACAAGCAAAAGGCAGCAGCGGCCGCGGCAGCCATCGCTGCGGCCAACTCGGACACTTCGGGCTCTAGTCTTCTGGCCATCACTCCCACCGTGCTTCGTTCGGTCCAGCTGCGGTCCGTTAGCAAGCCCAGCGACCCAAGCCAGGACAGACAGAATACCGAGGCTTTCCCCCGGCTGAAATGCCCCACTGTGACAATTGTCAGTCCACCCGCCAGTAACATGTCCTCAGAATCAAAGAGACCCACGTCCCACAAGTCCTATGATCCCCATTCTCAGGAGTCCCCTCAGACACCGTTTACTCCAGGCGACGGACCCTACGCAAGGGATGTAGCATATCTTGACAACGCTAAATGCAAGCAAGAGAAAAAAgcctcgcccccccccccaggggCTACGGCAGTAATTCAAGCTCCTTCCGACTCATCGTGCACAGATGACAATCTCTTATTGAAGCCGCCATTTCAGACCGAGGCTCATCTCCCAGGAAATGAGCTTCGGAAAGACCCTGAGTGCAGAGGGATGTCTGGGCCCGCGGCCTGCCCAGAAGAGGAGGAACAAGAGAGGAGCGCATCGCGGATCCCGATCCCTAGCAGCAGCCTAGCGGCGGTGCACAGTCAGCTGACGAGACCCGAGCCAGCCGCCGAGACCCCACTGGGCGGTCTGACGAAAGCAGGTTCCCCTCCTGCGTCCAACGATATAGCAAAGAAGTTTGACTTTGGTTCGTGCAACAGTTTTGACAAAGTGCCTGTAATTATTACTTATCAATCAGAAACATCGCAAGCTTACACAATCAGTGATACCAGTAGCAGAGAGCAGGAATATGACGACACATCAGGTGTTCCTACCAGAAGTGCCTCACAGGACAGCAGGGAAGAGGGGACAACGCCAGACACTGAAGATTACTACAGCAAAGAGTCTACGCCTAGTGACAACTCACTTTCGCCACTGAGTGATGAGACGAAGGCTGAAGATGACAGTGTTTTCCTATCTCCTAACAAACTACGCACTACTGAAGATCTTTTCGCCATGATTCACAGATCCAAAAGAAAAGTGCTGGGACGAAAGGACTCGGGGGAGCTGGGCGTGAGGAACAGGTTGAGCACCGCGCCCGTGAGCTCCCCGGCCACATCTCCGGGCACACCGGCCACCTCCCCGGGCACCCCAGGCGCCTCCCAGCGCACGCCAGGACCCATCTACAGGAGTGCCAAAAAGTCCAGCACCTCCAACGAGGAGTtcaagctgctgctgctgaagaaGGGCAGCCGCACGGACTCCAGCTACAGGATGTCCGCGACGGAGATCCTCAAGAGTCCCGTGGCGCCCAAGTCTCCCGGCGACCTCGGCGCGGAGGGCCCCCGCACCCCGGAGGAGCTGGCCTCTCCCCTCCAGCTGCCCCTGTCGGCGTCCGAGCAGCTCTCCAGCCCCTCTCCCAGAGCCAACACGGAAGGGTTCTCCTCGAAGACCTTCGGGATGTCCGCCTCCTCCCGGCAGGGCCGCTCCCGGATCCCCCCCGCCGCCAACAGCAGCCGCTACAGCATGCGTAGCCGCCTCTATACAGCGCCCATGCAGGCCATCtcggagggggagacggagaaCTCGGACGGTAGCCCCCACGACGACCGGTCCTCTCAAAGCTCCTCGTAGATAGAGTATctagatttccttttttttttttttttttataaaacagaaaa

Function

GO: NA

KEGG:

id description
K24144 NHS; Nance-Horan syndrome protein and NHS-like proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84995 lncRNA upstream 173385 2976214 ~ 2976510 (+) True G68046
TU84933 lncRNA upstream 347851 2782339 ~ 2802044 (+) True G67994
TU84941 lncRNA upstream 352086 2792742 ~ 2797809 (+) True G67997
TU84927 lncRNA upstream 381058 2767502 ~ 2768837 (+) True G67988
TU84919 lncRNA upstream 394411 2746244 ~ 2755484 (+) True G67983
TU85148 lncRNA downstream 58357 3224574 ~ 3226499 (+) True G68151
TU85150 lncRNA downstream 60642 3226859 ~ 3228126 (+) True G68153
TU85167 lncRNA downstream 208620 3374837 ~ 3375148 (+) True G68166
TU85168 lncRNA downstream 209368 3375585 ~ 3375789 (+) True G68167
TU85192 lncRNA downstream 244761 3410978 ~ 3483649 (+) True G68189
AMCG00014162 mRNA upstream 105150 3044338 ~ 3044745 (+) True AMCG00014162
AMCG00014163 mRNA upstream 119192 2996445 ~ 3030703 (+) True AMCG00014163
AMCG00014152 mRNA upstream 221585 2923400 ~ 2928310 (+) True AMCG00014152
AMCG00014161 mRNA upstream 234731 2909429 ~ 2915164 (+) True AMCG00014161
AMCG00014149 mRNA upstream 328439 2819542 ~ 2821456 (+) True AMCG00014149
AMCG00014166 mRNA downstream 5617 3171834 ~ 3176055 (+) True AMCG00014166
AMCG00014165 mRNA downstream 53986 3220203 ~ 3221921 (+) True AMCG00014165
AMCG00014171 mRNA downstream 173135 3339352 ~ 3370944 (+) True AMCG00014171
AMCG00014170 mRNA downstream 211475 3377692 ~ 3378273 (+) True AMCG00014170
AMCG00014174 mRNA downstream 225390 3391607 ~ 3397123 (+) True AMCG00014174
TU84895 other upstream 439566 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 439566 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 439566 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 439566 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1019750 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1482983 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1482983 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 4179978 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 4247423 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 6836841 10003058 ~ 10008648 (+) True G69406

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043449 True 4671 mRNA 0.48 6 NC_007134.7 41200854 ~ 41229194 (+)
grasscarp (Ctenopharyngodon idella) CI01000306_05740500_05745336.mRNA True 3772 mRNA 0.49 7 CI01000306 5740321 ~ 5745473 (+)
striped catfish (Pangasianodon hypophthalmus) TU433445 True 2949 lncRNA 0.50 1 NC_047619.1 14875762 ~ 14878710 (-)