RNA id: AMCG00014166


Basic Information

Item Value
RNA id AMCG00014166
length 1400
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00014166
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3171834 ~ 3176055 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCTCGCTTCCTCGGGGCGGCACTCAGGCGGGCAACTGCGAGGGATTGTGTTACGCGTCACCTCCAGCGCGCAGGCGCAGCAGCCGAGCGAACGTACGGAACGGGAGTGGCCTGGCGCGGGGGGGCCGGGGATCAAACGGGACTGCGGGCCGGCAGGACGTGCGGGATCCGGGGCGCAGCGGCACACGCACCGCCAGAGCAACAGCAGCCATGTCCGCATACGaTCATTTTCCTGTGAAGATTAAAGATGAGGAGGAGTACGAGCAGATCCTGGTCGCAGACCCGCAGAGTCACGGCGCGTCGGAGGAGACGGCGAGCGACCAGGACCAGCCGCCTGAGCCGGACTGCCCCAAAGCCTACTGTGTCCAGATGGTTTATGGTGATGCGCTGACTGGGAATCCATCGAACACCGAAGCCCAGCACAACGGCCGCGGGGCCGAGGAGGAGCGGTACAGCCCGAGAGCGAAGAGGAAGCGAGGCCCCGGCTCAGTCACAGGCAGCATGGTATGGAAGCCTGCACTGTGCTTTTGTGCAGCAAGTAAtataaaaactataatttaCACAGTCACGGCTCAGAGTCTAGGAGCCCTGGCACGTGTAGAAGACGTGAATCATCTGCAGCACGAGACCGACCTGCTGAGGATCCTGGGGGAAGAGGCGAAGGACGGTGGCATCTCCCAGCACCCTGCGCGCCTCCTGCGCCCGGAGGAGAGAGTCCTTGCCTTGATGACAGAGCTGGCTGGGGTGCGGCGAGTGAGCGCGGCCGGCACACCGCACACGCGGCTCCGCTCTCCTCCAGACCTGCAGCCTGCACAGCCAGTGGGGGTCCGGGGGGATACCGTGCCTTAAAGTGCCAGCAGGGAAATGGGTCCTTCCATAATCTTTCTTCACACTTCCGACCAGCCAGAGCCAGGGATCAACTGGGAAGTTTGTTTTCCAGCATCGAGTTCAACAGGAAATTGGGATCGCGATGGAAGCTGAGTTGTGCAGCATAAAACAAATCAGCCCCAAGACATTCATCGGGACCTGCTAAAGATGAGCTCCAACATGGCCCGTTTGTGTGACAGGATGGCTGCCCATGTTAATGCCCTGGTGGAGCAACAAACCCCAGCCCAGCCCGGCCACGATGCCAACACGGTCAAACCCGACCCAGAGGATCTTACTGCCCTGCAGACGGTCACCTGATCCATTGACTCCCGGCACACCGAGTCAGTAGTGGGACCCCGCACTCCAGGCCAAGCGTTGCAGGGGttctttcattttcatgcaCGCAAACCAACCAAGCTTTCACATCTAACTTACTTAGAAGttacttattatattaaatatttacagtataaacagaactgccattttaaaatgtcaacaaacattttcaaaaataaaaatatgtattctag

Function

GO:

id name namespace
GO:0061982 meiosis I cell cycle process biological_process
GO:0051321 meiotic cell cycle biological_process
GO:1903046 meiotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84995 lncRNA upstream 195324 2976214 ~ 2976510 (+) True G68046
TU84933 lncRNA upstream 369790 2782339 ~ 2802044 (+) True G67994
TU84941 lncRNA upstream 374025 2792742 ~ 2797809 (+) True G67997
TU84927 lncRNA upstream 402997 2767502 ~ 2768837 (+) True G67988
TU84919 lncRNA upstream 416350 2746244 ~ 2755484 (+) True G67983
TU85148 lncRNA downstream 48519 3224574 ~ 3226499 (+) True G68151
TU85150 lncRNA downstream 50804 3226859 ~ 3228126 (+) True G68153
TU85167 lncRNA downstream 198782 3374837 ~ 3375148 (+) True G68166
TU85168 lncRNA downstream 199530 3375585 ~ 3375789 (+) True G68167
TU85192 lncRNA downstream 234923 3410978 ~ 3483649 (+) True G68189
AMCG00014164 mRNA upstream 5617 3149895 ~ 3166217 (+) True AMCG00014164
AMCG00014162 mRNA upstream 127089 3044338 ~ 3044745 (+) True AMCG00014162
AMCG00014163 mRNA upstream 141131 2996445 ~ 3030703 (+) True AMCG00014163
AMCG00014152 mRNA upstream 243524 2923400 ~ 2928310 (+) True AMCG00014152
AMCG00014161 mRNA upstream 256670 2909429 ~ 2915164 (+) True AMCG00014161
AMCG00014165 mRNA downstream 44148 3220203 ~ 3221921 (+) True AMCG00014165
AMCG00014171 mRNA downstream 163297 3339352 ~ 3370944 (+) True AMCG00014171
AMCG00014170 mRNA downstream 201637 3377692 ~ 3378273 (+) True AMCG00014170
AMCG00014174 mRNA downstream 215552 3391607 ~ 3397123 (+) True AMCG00014174
AMCG00014175 mRNA downstream 222236 3398291 ~ 3409107 (+) True AMCG00014175
TU84895 other upstream 461505 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 461505 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 461505 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 461505 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1041689 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1473145 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1473145 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 4170140 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 4237585 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 6827003 10003058 ~ 10008648 (+) True G69406

Expression Profile