RNA id: AMCG00014174


Basic Information

Item Value
RNA id AMCG00014174
length 1464
RNA type mRNA
GC content 0.61
exon number 9
gene id AMCG00014174
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3391607 ~ 3397123 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCACCGGAGCTGCCCAGACTCCTCTGCAATCTGTTGGCTTTGGACACAGAGCGAAAACAACAGCTGAGAAAGAGGCTGTGTCACCCGTCGGTGGGCAAACAGACACCCAACTCTACCCACGGGAAGGATATTCTGCAGATCCTGCAAGATGTCTTCAGCCTGCTTCCAGTGGCGACAGTAATTGACAACAAAGTGCTTATCGTCCATGGAGGGATTTCGGACTTGACCGACCTGGATTTCCTGGGCTCCATCGAGAGGCACAAGTTCAAGTCCGCACTCAGGCCCCCGAAGCGCAGCCTCGACCTCGGCGAGGAGAGGGGCCACAGACAGGTGGTGGGCTCGTATACGGACCGCGGCGGCAGTGGCTCCTCCAAACGGCGCCAAGCCAAGCTACCCAAGCAGCGCAGCAgctcgtcctcgtcctcctcgGCGTCCTCCCGTCACTCCTCCTCTTCGTGGGACAAGGACCCTGCCCCGCGCAGCGTGGCCAGCCCCAGCGCCAGCCTGGAGGTGCCCTTCCTCGACTCCGACGTCTCCATCGCGCCCAGAGAGCCGCCCCGGGAGGAGGTCGAGTGGAAGCAGATCGTTGACCTGCTCTGGAGCGACCCCAAGAGCCACAGCGGCTGCACGCCCAACACCTTCAGAGGGGGCGGCTGCTACTTCGGGCCGGACGTCACCCAGAAGCTGCTGAAAAAACACCAGCTGAAGATGCTGATCCGCTCCCACGAGTGCAAGCAGGAGGGATACGAGCTGTGCCACGATGGCAAGGTGATCACCATTTTCTCCGCCTCCAACTACTATGAGGTGGGCAGTAACCGCGGGGCGTACGTCAAGCTGGGCCCAGACCTGATCCCTCGCTTCTTCCAGTACCAAGTCAGCAAGTGCACCCGGAAGATGACGCTGCAGCAACGGGTTAGCGTGGCCGAAGGTTCGGCCCTGAAGTCTCTGCAGGAGAAGCTGTATGCCCACCGGTCCGAGCTGATCGCCGCCTTCCAGCAGTACGACCAGAGCAgcacagGCCGGATCTCCATCAGCGAGTGGGCGATGGCGGTGGAGTCCGTGCTGCGCCTGGACCTGCCCTGGCGGACCCTGCGCTCCCGGCTGGTCCGGCTGGCCCCCGACGGGGATGTCGAATACCTGTCCTGCTTCGAGGACCTGCACATGGGACAGCCCATTTCAGAGGTCACGCCAAACTTGGTTGAAACATTGTATCGGTATCGCACCGACCTGGagataatatttaatataatcgACAAAGATCATTCAGGGCTGATTTCGGTGGAGGAGTTCCGTCAGACCTGGAAGCTGTTCAGCTCCCACCTCAGCATCGACATCGATGACGCGGCCATCGACAACCTGGCGCGGAGCATCGACTTCAATAAGGACGGCAGCATCGACTTCAACGAGTTCCTGGAAGCCTTCCGCGTCGTGCACCGGCTGGAGGCCAAGCAGCCGCGCTGA

Function

GO: NA

KEGG:

id description
K13807 PPEF, PPP7C; serine/threonine-protein phosphatase with EF-hands

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85168 lncRNA upstream 15818 3375585 ~ 3375789 (+) True G68167
TU85167 lncRNA upstream 16459 3374837 ~ 3375148 (+) True G68166
TU85150 lncRNA upstream 163481 3226859 ~ 3228126 (+) True G68153
TU85148 lncRNA upstream 165108 3224574 ~ 3226499 (+) True G68151
TU84995 lncRNA upstream 415097 2976214 ~ 2976510 (+) True G68046
TU85192 lncRNA downstream 13855 3410978 ~ 3483649 (+) True G68189
TU85329 lncRNA downstream 557243 3954366 ~ 3955265 (+) True G68292
TU85358 lncRNA downstream 686640 4083763 ~ 4083964 (+) True G68317
TU85370 lncRNA downstream 730353 4127476 ~ 4131718 (+) True AMCG00014196
TU85439 lncRNA downstream 896203 4293326 ~ 4293526 (+) True G68374
AMCG00014170 mRNA upstream 13334 3377692 ~ 3378273 (+) True AMCG00014170
AMCG00014171 mRNA upstream 20663 3339352 ~ 3370944 (+) True AMCG00014171
AMCG00014165 mRNA upstream 169686 3220203 ~ 3221921 (+) True AMCG00014165
AMCG00014166 mRNA upstream 215552 3171834 ~ 3176055 (+) True AMCG00014166
AMCG00014164 mRNA upstream 225390 3149895 ~ 3166217 (+) True AMCG00014164
AMCG00014175 mRNA downstream 1168 3398291 ~ 3409107 (+) True AMCG00014175
AMCG00014176 mRNA downstream 37034 3434157 ~ 3452490 (+) True AMCG00014176
AMCG00014173 mRNA downstream 64945 3462068 ~ 3471988 (+) True AMCG00014173
AMCG00014184 mRNA downstream 92356 3489479 ~ 3511658 (+) True AMCG00014184
AMCG00014182 mRNA downstream 129894 3527017 ~ 3554734 (+) True AMCG00014182
TU84895 other upstream 681278 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 681278 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 681278 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 681278 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1261462 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1252077 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1252077 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3949072 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 4016517 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 6605935 10003058 ~ 10008648 (+) True G69406

Expression Profile