RNA id: AMCG00014175


Basic Information

Item Value
RNA id AMCG00014175
length 3516
RNA type mRNA
GC content 0.58
exon number 12
gene id AMCG00014175
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3398291 ~ 3409107 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGATCGTAAggggtggggggggactcTTCCCGGAGGCCCAGCCCTGTGATGTGGATCAGGGGGCAGGGTGTCTGCAGCCCAGCCTGCCGTGCTCCTCGCCTGGCGTCTGCCTCCCTGAACTCCCGTCAGTTTCCACCGAGATCACCCAGCCGGCCGTACCCCCGCGCCCCACTGACGGCCTCCCCATGAGGACTCCCCCAGGGCTGCTGTCTGCGCTGCTCTTCCTGCACTGCTCTCTCTGTAAAGACTCTGCTGGTGGAAGGTGTCATGGGTTGAGACGCCTGGAGAACGGACGCACGTTTTTCCGCTATGGAGGCCTGTTTGTAACGTTCACCTGCAACCCGGGATTCCGGGTTCATGGCTATCAAACCAGCAGCTGTGTGTCCGGACGCTGGACCAGGGACCCCCCCGTGTGTGTAGGCTCGGGATGTCCGAACCCGGGGGGGATCCTCCACGGCAGCAGCACCATGAATCCGGACCGATCCTTCATCTTCTTCATCTGCGACAAGGGCTACAGGCTCTTCGGAGCTCCTCTGCTGTACTGCAGGGGCAGAGGGTGGAATGGCACGAAGCCGGTGTGCAAAGAGTCCGACATGATGAGTTCAGACAAGCACAAGCACCTTGCCCAGCTGCGGGCCAACCTGGCACAAAACCTCAATGCACCATCTGCTTTGAAAAACCTCTTCCGCGTCCAGTATGACAGCATCGTCAACTCGGCGTCCAAGGATGTGGTCCTGGAGCCGGAGCTACTGGTGGAGAGCCCGAGGGCCACCAACATCAAACCGGGACATCAAGCAGGGGCCCTGAGGCAGCTGACGGTGAGGAGCAGAGTCCCGGAGGTCAATGACAAGGGCATTTACGTTGACAAGCAGCACCAGTCTGGTAGAGCTACTGTGGGAGGTAGAGCTGGAGCTAAAGAGGCCTACAAGGAACCAGGCAGCTTTGAAAAGTCTCTCTTCAAGTTATCTTCCCTACAGACATCGCCCACCTCTCCCCTGTCCACTGCATCTACCCTGGCAGATAAACTCGTGACCacaactttacagttggcaaaAGTTACAGTTCCATGGGACAAAGTGTTCATAAGGTCAACCGTACAGATTCCAGCTTATCCGCTGATCAcagagcatgctgggaaaaTATATTATGTGGCCCCAACCTCACGTTCACCGTCCTTCACTGCACTATTGGCCCCACTGCGTAGATATGGCACCACTGACCAGACCCTTGTCATCCCTGAGCCCAGTTCAGAATCGTTATCTTCAGCATCAACAAGGGAACCACAGCTCCACATTCCAGAGAAAGTGCCCATTGTAATACAGGCTGCTCCTCAGACTCTAAATGCACAATCTCTGACACCATCTTCACTTCCCACGGTTCCTGCCACATCACTGGATACCCCCGTGACTGCAGAAGCCCTGCGCCAAGTGGCCGAGACTTCAGAAGGTTTGGAAGATGACATGGCTTCCCCTACCATGCTCAGCAGCTACACATCCCTATCTAGCGAGGGATTTTCAGCACATTTACAAAGTTCCCCAGTTCATCCTGTCCTTGTAGGGGAATCGGGCACAGGTTTGACACAAAGCACACCTCTTCAAGGCAGTTATGAGACTGGGCCCGATGGGCATTTAAAAATGGCACAGCAGCCTTCAGGTGAAACAGGGGCCGACCATTCAGAAGGAATTATTTCAACTACCGTCAATGAAACAAGTGTATATAGAGTGGGGAAAAGGATGAACCAAATGTCTACCACCACATTCGGCCCAAGTGCGTTTCATCGTGATTCTCTGGTCTCGGGCGCTGACTTGCAGCCTGTGATGAACAGCCCGGCACAGTCTGCTGCCCCTGTCATCACCAACTCTCAAGATGGAAGAAAGGACCGACAGAGGAAGACACCCACAGCGGCACAAAAGGATTTACAGCCAGAGAGGGAAGCTTTGGGAACTACCATTCTCACTGATTTGGGAGACGTCCGTCCCAGAGCTGGCTGGTGGGAAACTGCGGAAACAGATGTGGCCTCGGGATATCGCAATAAACACCCATTggcagagcagagcagcacGGCACCATCAGATGCCGCCAGTCGGACCACAGGAAATGATACTGACCAGCCGGTTAAGGCAACAGAACACACAGACGGAACCGTCAGCACTGTTCTGGAATCCCTGATCTCTATCACGGCAGGCCGGAGCCCCGTGCCAACACCTGCACACCTCCAAAGTCCCCTCGCCACCGCAATCAACAACTCCCTGCCCCTCGCAGTCCCCGGCCCCGTGCCCAGCGCCCCCCATCATAACTTGGTGGAGATCAGACCCGATGACCCGCCACCGCTGGGTTCTCTGAAGAGGAGGCCCGTGTGTCCATACCCACCTCTGCCCGCCCACGGGACCTTCTTCTTCCGCACGGTGCCCAACCCAGCCCCGCTGCAGTACAAGCACTACGTACAGTACTCCTGTTATGCCGGATACACTCTCGCCCACGGGGACGTCTACAGCTACTGTTTACACAGCGGCAAGTGGAGTGGAGTCACACCGGCCTGCTTAGAAGTGACGCCCTGCTCCATCAACAATGGGGGCTGCTCTCAGATCTGCAAGCTGGGCCTGCTGGGCCGGGCCGAGTGCAGCTGCAGGGAGGGCTTTGAgctgctggaggacaacagcacgTGCAGAGATGTTGACGAGTGTGCGGACGAGCTCCACCGCTGCCAGCAGGCCTGTGTGAACACCTTCGGCTCGTACGAGTGCGGCTGTGGCCCCAGCTACCTGCTGTCAGAGGACGAGAGGTCATGCTCAGACCGAGACGAGTGTGCCATCAATAACGGCGGCTGTCTGCACCACTGCGCCAACTCCGCCGGGAGCTTCCGCTGCCTCTGTGAGCCAGGCTTTCAGCTGGCAAACGACCAGAGGACCTGCCACGACGTGGACGAGTGCCAGCTGCCCATCGGCACGGCCGGTTGCTTGTTTGGCTGCATCAACACCCCGGGCAGTTTCCGGTGCCACTGCCCAGAGGGGTACAGACTGGGTACTGCGCACGGACATTGCATAGACATTGACGAGTGTGCGGAGAACAGCGGCCGCGGCCCCTGCGCCATGGAGTGCCACAACGCCCCCGGCTCATTCCGCTGCTCCTGCGCCTACGGGTACAAGCTGGCTGGGGACGGGCGCTCCTGTGTGGCCGAGTGCCCCTCTGGATACCGCAAGCACGGCAACGCAACCGGGAGGAGCAGAGAGCACTGCATTGATATTGACGAGTGCGAGGAGCCCACGTGGCACCAACGCAGGTGTGAGTGGAAGTGTGTCAACCTGCCGGGCTCCCACCGCTGCATCTGCCCGAGGGGGTTCAGGCTGGGCTCAGACGCATACCACTGCCAGGataTAAATGAATGCGAGTCTAAAAATGGAGGCTGTTCTCACATCTGCATCAACCACAAAGGAGGCTACAGATGTGCCTGTCCAGAACTCCACCGCTTCTCTCCCTACAGCAGGAAAAAGTGCCAGCCAGTCAAAACATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85168 lncRNA upstream 22502 3375585 ~ 3375789 (+) True G68167
TU85167 lncRNA upstream 23143 3374837 ~ 3375148 (+) True G68166
TU85150 lncRNA upstream 170165 3226859 ~ 3228126 (+) True G68153
TU85148 lncRNA upstream 171792 3224574 ~ 3226499 (+) True G68151
TU84995 lncRNA upstream 421781 2976214 ~ 2976510 (+) True G68046
TU85192 lncRNA downstream 1871 3410978 ~ 3483649 (+) True G68189
TU85329 lncRNA downstream 545259 3954366 ~ 3955265 (+) True G68292
TU85358 lncRNA downstream 674656 4083763 ~ 4083964 (+) True G68317
TU85370 lncRNA downstream 718369 4127476 ~ 4131718 (+) True AMCG00014196
TU85439 lncRNA downstream 884219 4293326 ~ 4293526 (+) True G68374
AMCG00014174 mRNA upstream 1168 3391607 ~ 3397123 (+) True AMCG00014174
AMCG00014170 mRNA upstream 20018 3377692 ~ 3378273 (+) True AMCG00014170
AMCG00014171 mRNA upstream 27347 3339352 ~ 3370944 (+) True AMCG00014171
AMCG00014165 mRNA upstream 176370 3220203 ~ 3221921 (+) True AMCG00014165
AMCG00014166 mRNA upstream 222236 3171834 ~ 3176055 (+) True AMCG00014166
AMCG00014176 mRNA downstream 25050 3434157 ~ 3452490 (+) True AMCG00014176
AMCG00014173 mRNA downstream 52961 3462068 ~ 3471988 (+) True AMCG00014173
AMCG00014184 mRNA downstream 80372 3489479 ~ 3511658 (+) True AMCG00014184
AMCG00014182 mRNA downstream 117910 3527017 ~ 3554734 (+) True AMCG00014182
AMCG00014183 mRNA downstream 149811 3558918 ~ 3559709 (+) True AMCG00014183
TU84895 other upstream 687962 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 687962 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 687962 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 687962 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1268146 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1240093 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1240093 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3937088 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 4004533 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 6593951 10003058 ~ 10008648 (+) True G69406

Expression Profile