RNA id: AMCG00014176


Basic Information

Item Value
RNA id AMCG00014176
length 774
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00014176
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3434157 ~ 3452490 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAAGCCTACATCCGAGTCTGGGAGCCAATCAGCGCCGGGCTGGGTCGTACATGATTCATCCCGGAGAGGAGACGGAGGGGGCCGAGCATATTGAACTGGCCGCGCTGTGTGTCCGCTGCTGCGCATGGTTTCTGTCCGGGGAGCCTGACTACAGATTATGCCGGCAGGGGAAACTCAGACTGCAGAAATGGTATGTACCCTTGTCCgacaaggagaagaagaagatcACGCGGGAGCTGGTGCAGACCGTGCTGGCCCGTAAGCCCAAGATGTGCAGCTTCCTGGAGTGGAGAGACCTCAAGATTGTTTACAAAAGGCTGACCCACAACCAGCAGCTAAACACGGCCTGCTGGGACACTGACCGGTCTGTAGCCTCCCGCTGCCAGACGGGCTCTGAAAGCGGCCAGCCAGCGAAGACAATTACCAGGAAAAATGgcttgtgcttgtttttgaaCGCAGCTGCATATTTCCTCCGGTATGCTAGCCTGTATTTCTGCTGTGCCATTGAAGACCAGGACAATGAGCTCATCACACTGGAGATCATCCACCGATACGTAGAGCTGCTGGATAAGTACTTTGGCAGTGTGTGTGAGCTGGACATCATCTTCAACTTCGAGAAGGCTTATTTCATCCTGGACGAGTTCCTGCTGGGAGGGGAGGCCCAGGAGACCTCCAAGAAGAACGTGCTGAAGGCCATCGAACAGGCAGACCTTCTCCAAGAGGAAGCTGAGACCCCGCGCAGCGTCCTCGAAGAGATTGGACTGACATAG

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K12394 AP1S1_2; AP-1 complex subunit sigma 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85168 lncRNA upstream 58368 3375585 ~ 3375789 (+) True G68167
TU85167 lncRNA upstream 59009 3374837 ~ 3375148 (+) True G68166
TU85150 lncRNA upstream 206031 3226859 ~ 3228126 (+) True G68153
TU85148 lncRNA upstream 207658 3224574 ~ 3226499 (+) True G68151
TU84995 lncRNA upstream 457647 2976214 ~ 2976510 (+) True G68046
TU85329 lncRNA downstream 501876 3954366 ~ 3955265 (+) True G68292
TU85358 lncRNA downstream 631273 4083763 ~ 4083964 (+) True G68317
TU85370 lncRNA downstream 674986 4127476 ~ 4131718 (+) True AMCG00014196
TU85439 lncRNA downstream 840836 4293326 ~ 4293526 (+) True G68374
TU85441 lncRNA downstream 842327 4294817 ~ 4295819 (+) True G68376
AMCG00014175 mRNA upstream 25050 3398291 ~ 3409107 (+) True AMCG00014175
AMCG00014174 mRNA upstream 37034 3391607 ~ 3397123 (+) True AMCG00014174
AMCG00014170 mRNA upstream 55884 3377692 ~ 3378273 (+) True AMCG00014170
AMCG00014171 mRNA upstream 63213 3339352 ~ 3370944 (+) True AMCG00014171
AMCG00014165 mRNA upstream 212236 3220203 ~ 3221921 (+) True AMCG00014165
AMCG00014173 mRNA downstream 9578 3462068 ~ 3471988 (+) True AMCG00014173
AMCG00014184 mRNA downstream 36989 3489479 ~ 3511658 (+) True AMCG00014184
AMCG00014182 mRNA downstream 74527 3527017 ~ 3554734 (+) True AMCG00014182
AMCG00014183 mRNA downstream 106428 3558918 ~ 3559709 (+) True AMCG00014183
AMCG00014188 mRNA downstream 130129 3582619 ~ 3582945 (+) True AMCG00014188
TU84895 other upstream 723828 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 723828 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 723828 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 723828 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1304012 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1196710 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1196710 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3893705 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 3961150 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 6550568 10003058 ~ 10008648 (+) True G69406

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044650 True 297 mRNA 0.56 3 NC_007134.7 46210204 ~ 46217134 (-)
grasscarp (Ctenopharyngodon idella) CI01000026_02413193_02426439.mRNA True 2364 mRNA 0.44 13 CI01000026 2413096 ~ 2427014 (-)