RNA id: AMCG00014180


Basic Information

Item Value
RNA id AMCG00014180
length 4830
RNA type mRNA
GC content 0.55
exon number 29
gene id AMCG00014180
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3410978 ~ 3432333 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCGCTCTGCCTGCTGTCATTGAAGGTTACCCTGCGGCGGTGCACGGATACATCAGCTAGACATGCACAGCGGGACAGCGACCACACTCTAGTGTATCTCTGCTAGCACTTTGCAAAAGAGGGACCTCTCCTGAGCGAGCATGCGCAGTCGCAGTAACTCGGGCGTGCGGCTGGACGGCTATGCCAGGATGGTGCAGCAGACGATTCTGTGCCATCAGaaCGCCGTTACTGGGCTGCTCCCCGCCAGTGACGTGCAGAGAGACGCCTGGGTCCGGGACAATGTGTACAGCATACTGTCCGTGTGGGGACTGGGCATGGCCTACCGCAAGAACGCAGACCGCGATGAGGACAAAGCCAAGGCCTACGAGCTGGAGCAGAGTGTTGTCAAACTGATGCAAGGCCTGCTGCAGTGCATGATGAGACAGGTGCAGAAAGTGGAGAAGTTCAAACACACCCAGAGCACCAAAGACTGCCTCCACGCCAAGTACCACACGGCCACGTGCAGCACTGTGGTGGGGGACGACCAGTGGGGGCACCTGCAGGTGGACGCCACGTCTCTGTACCTGCTCTTCCTGGCACAGATGACCGCGTCAGGTCTACGCATCGTGTCTAACTTGGACGAAGTGGCGTTCATACAGAACCTCGTGTTTTATATCGAGGCGGCCTACAAAGTCGCTGATTACGGGATGTGGGAGCGCGGTGACAAGACCAACCAGGGGATCCCAGAACTGAACGGCAGCTCCGTGGGGATGGCCAAGGCCGCACTGGAAGCCATTGACGAGCTGGACCTGTTCGGGGCACATGGGGGGCCGAAGTCAGTCATCCACGTTCTCCCAGACGAGGTGGAGCACTGCCAGTCCATCTTGTGCTCCATGCTGCCCAGGGCCTCCACCTCAAAGGAGATCGATGCCGGCCTGCTGTCCGTCATCTCGTTCCCGGCCTTCGCAGTGGAGGACTCGGACCTGGTGAACATCACAAAGAACGAGATCATCAGTAAACTGCAGGTAGAAGAGTACAGAGAGGCCCTGGACGGGATTCTCATTCGGAAAAAGAACGGCATCCGCTTGGTGCCGGAGCTGTACGCGGTCCCGGCTGACAAGGTGGAGGAGGAGTACAGCAGCCCCCACACCGTGGACCGCGTGGCGACAGGGAAGTTGCCTCACATGTGGGGCCAGTCTCTCTACATCCTGGGCTGTCTGCTGGCTGAGGGTTTTCTGGCCCCAGGAGAGATAGATCCCCTCAACAGGAGGTTCTCGACATCTTTCAAGCCTGATGTCGTTGTGCAAGtgtgtgtcgTGGCAGAGACCGAGCAGATCCAGGCCCTTCTGAGAGAGCAGGGTGTCGAGGTCCAGACCGTTGACCAGGTCCTGCCTATCCGCATCCTGCCGGCCCGCATCCTCAGCCACATCTATGTCAAACTGGGTAACAATAAGAAGTTGAAGCTGAGTGGGCGGCCATACAGACACATCGGGGTCCTGGGAACCTCGAAGCTGTACAGTCTCAGAAATCGCAGCTATACATTCACTCCACAGTTCATTGACCAGCACCACTTCTACCTGGCTCTGGACAACCAGATGATCGTGGAGATGCTGCGCACCGAGCTGGCCTACCTCTCGACCTGCTGGAGGATGACGGGGAGGCCCACCCTCACCTTCCCCATCACTCACAGCATGCTCAGTGAAGTCGACGGGACCATTGACCCGGCCATACTAGCCACCCTCCGAAAGTTGCAAGATGGATACTTTGGAGGAGCAAGGGTGCAGATGGGCCAGCTGGCCAGCTTCCTCACCACTTCCTTCCACACCCACCTGAGCTTCCTGGACGCGGACTGTAAtgtgctggaggaggaggacgagtgCGACAGCGTCAGTGAGGAGCAGTACGAGGACGGGGAGTCTCCCCAGGACTACTCCCACACAGGCACCTCGAAGGATGAGTTCGACCAGTACATCAACCACCTGCTGCAGAGCACGGTTTCCATGACCCACCTGCCCTGCGTCGTTCGGAGGGCCGGCCAGCAGCATATGTTCAGTGCAGAGCACACGACCAGAGACATCCTGTCCATGGTGGCCAAGGCCCAGGGATTCCAGGTGCCAAAGGTTTCCATGTGTCTGCCGGCCGTGCCTGTCCTAAACAGACACCGCAAGTCCCTGAACCTGCTGGACGTCCCCCAGTCACATCACACCACGAAGGACCTCAACTTCGATCTTCATCTCCCCCGGGACGCTCACGGCAAGGTGGACTGTGATTCGCTGGTGGAACAGCTGAAGGACTGCCCAACCCTGCAGGACCAGGCCGACATCCTGTACATCCTGTTCGCCCTGAAGGGCCCTGACTGGTGCGTGAAGCTGTCGGGGCAGTGCGGGGTGACCGTGCACTCCCTGCTCAACGAGCTGTACGGCAAGGCGGGCAGCGCCAAGGAGTGGGGCCTGATCCGCTACATCTCCGGCATACAGCGCAAGAGGGTGGAGGTGCTGGCCGAGGCCTGCACCGACCTCATCTCGCACCACAAGCAGCTGACAGTGGGCCTGCCTCCGGAGCCGAGGGAGAAAGTCATTACAGCGCCCCTGCCTCCCGAGGAGCTGAACAAATTGATCTACGAAGCCAGTGGACAGGACATCAGCATCGCCGTTCTCACACAGGAGATCATCGTGTACCTGGCCATGTACGTCCGGTCGCAGCCCTCGCTCTTCGGGGACATGCTGCGCCTCCGGATCGGCCTCATCATCCAGGTGATGGCCACCGAGCTCGCCCGCAGCCTGCACTGCTCAGGTGAAGAGGCGTCTGAAAGTCTGATGAACCTGAGTCCTTCCGACATGAAGAACCTGCTTCATCATATCCTGAGTGGGAAGGAGTTTGGGGTGGAGAGGAGCATGCGACCTATTGAGTCCACTGCCACCAGCCCGGCCATATCGATCCACGAACTGGGCCATACTGGAGCCACCAAGACCGAGCGCACGGGCATCACCAAACTGAAGTCTGAGATGAAGCAGAGGTGCAGCAGCCCCTCCTCCCCCAGCGGCACATTGTCCCCCACCGGCCCGGGGACGCCCCACCTGCACTGGGAGGAACGGCAGGGCCAGTGGCTGCGCAGGAGGCGTCTGGATGGGGCCATCAACCGGGTGCCCATGGGTTTCTACCAGAAAGTGTGGAAGATCCTACAGAAGTGTCACGGTCTGTCGATTGATGGCTACGTGCTTCCTTCTTCAACCACTCGCGAGGTCAGTCAGACCTCGGCAGACCTCTACCGCAGTGTTTCCGAGCAGCTCTCACCGACTCACGTGGTGGTGTTTTCTCTCCCCCCCGCGCAGATGACGGCGTGCGAGATCAAGTTCGCGGTGCACGTGGAGACGGTGCTGAACCACGTGCCACAGCCCGAGTACCGGCAGCTGCTGGTGGAGGCCATCCTGGTGCTCACGCTGGTGGCCGACATGGAGGTGCACAGCATCGGGGGCATCATCCACGTCGACCGCATTGTCCACATGGCCAACGACCTCTTCCGCCAAGACCAGAAAGTGCACGGAGCCGGCGAGTATTTCCTGGAGCAGGACCCGGCCACGGGGATCTGCACCTTTTTCTACGACAGCGCCCCCAGCGGCAGCTACGGCACCATGACTTACCTCTCCAAAGCAGTGGCGACCTACGTCCAGGACTTCCTTCCAAACACCAGCTGTCTGATGCAGTAGAgggtgtatttgtgtgtgtgtgtgtgtctggagttTTAGTTTAATGAGACATTTTTACAGTATTCGGCCACTCGTTGCACAGAGggtaattattatttagtgtTGTTTTAATCTATTGAATCAGGGCACAACTGTAACTGCCTTGAAAACTATGTGAAGCATGTAGAATGGTTTTTATTGTCATATTGGAAGGTCCATTTACTTGAtgattgaattgttttgttctgttcacaGTCTGTTCATGAGGCAGGACGTCTCTGGGGTGATACGGTCACACTATGTTCAATAAGTGCCTGTTTGGTTGcatcatttatatatgtgttgtTAGTCTGACAAGAAATTATTTTGGAATAACGGTTGAGTGAATACTGTGGTTTAAACATGAAAGCCCAGGGTGTGTTTCATTATCTGCTCTCTGCTTTATTGCAGTTCCATCACTCAATGATTACCtcattgtcattttgttttattaggtACGGATGCCAGTAACATTATTTATCCATTTCTGtttagaacaaaaataaatagacaagtTAAAGCATGTAGATTGTATTTTGGATGAGGGTTCTTCTGGTTTCTGGGTGGCATTGATAGCTGGACTTGGGTTCCCAGATGTCCTTCAAACTGACATCAACTACAATAACAGGGTaggaattcattttaaaaaggaggAAACTAAAAACTGCCAATATTCAGCTGCATGGTGGATAAGATCCTTCAAATACATTCTCTGAGCCAGCCTGGTTCACAGTGTTACCTGTCACTTACCTCctcatatttatttcagtgtagtGGTTCATATATTCTGTGGTATcccgttttctttcttttagagTGTAATATTGAGCCTCGTGCAGTGCGGACATCTCCAAAGGGACCTACGCCaggacacacaaataaaaacagcttctcAATGCAGTGTCTGTGCTGTCCGATCTGTAATAGCAGCGCTTCTGTGtccgttgtgtgtgtgtctgtacctCAGCTCCACTGTAGTTAGGGCATAAGTGTTCCCCTGGCTGTCCTGGCGTCTGCGTGTCTCGTCTCTTGCAGTCGCCATGTGTATCTCTGCATTCTCCATCCCGTGTTACTGCTGTATCCTTGACAGTTCGGCTCATTAAAGGACgaaacctgttttaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85184 lncRNA downstream 19598 3390988 ~ 3391380 (-) False AMCG00014181
TU85159 lncRNA downstream 182828 3226865 ~ 3228150 (-) True G68162
TU85111 lncRNA downstream 378214 3029109 ~ 3032764 (-) True G68124
TU85038 lncRNA downstream 605814 2776259 ~ 2805164 (-) True G68077
TU85251 lncRNA upstream 31102 3463435 ~ 3464792 (-) True G68224
TU85344 lncRNA upstream 524669 3957002 ~ 3957266 (-) True G68304
TU85365 lncRNA upstream 663882 4096215 ~ 4098475 (-) True G68324
TU85366 lncRNA upstream 663882 4096215 ~ 4098475 (-) False G68324
TU85367 lncRNA upstream 667231 4099564 ~ 4099927 (-) True G68325
AMCG00014181 mRNA downstream 16224 3385757 ~ 3394754 (-) True AMCG00014181
AMCG00014172 mRNA downstream 35825 3372298 ~ 3375153 (-) True AMCG00014172
AMCG00014168 mRNA downstream 159131 3250317 ~ 3251847 (-) True AMCG00014168
AMCG00014167 mRNA downstream 173950 3229180 ~ 3237028 (-) True AMCG00014167
AMCG00014169 mRNA downstream 215864 3184977 ~ 3195114 (-) True AMCG00014169
AMCG00014178 mRNA upstream 22478 3454811 ~ 3462463 (-) True AMCG00014178
AMCG00014179 mRNA upstream 39588 3471921 ~ 3479370 (-) True AMCG00014179
AMCG00014177 mRNA upstream 48016 3480349 ~ 3487826 (-) True AMCG00014177
AMCG00014185 mRNA upstream 134178 3566511 ~ 3573447 (-) True AMCG00014185
AMCG00014190 mRNA upstream 224744 3657077 ~ 3678256 (-) True AMCG00014190
TU85055 other downstream 581834 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 767071 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 868281 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 1492796 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 1508363 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 3945755 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 3985265 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 4704998 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 4723896 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 4950952 8383285 ~ 8384224 (-) True G69156

Expression Profile