RNA id: AMCG00014181


Basic Information

Item Value
RNA id AMCG00014181
length 1161
RNA type mRNA
GC content 0.56
exon number 8
gene id AMCG00014181
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3385757 ~ 3394754 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGACGTCGGAGTCGAGGAAGGGCACCTCCAGGCTGGCGCTGGGGCTGGCCACGCTGCGCGGGGCAGGGTCCTTGTCCCACGAAGAGGAGGACTTGGCTTGGCGCCGTTTGGAGGAGCCACTGCCGCCGCGGTCCGTATACGAGCCCACCACCTGTCTGTGGCCCCTCTCCTCGCCGAGGTCGAGGCTGCGCTTCGGGGGCCTGAGTGCGGACTTGAACTACGATACAGGAGAGAGACGTTGGAACTGGAGACGAGACTTACACGGAAAACTGGACGATTTATTGCTTATATTCTACaagaatGGTCTTCCTTCTGCCGAAAATCCATACGTGTTCAACGGCGATTTTGTTGACCGGGGAAAGAAGTCCATGGAGATCATCATCATCTTGTTTGCTTTCTTGCTCCTGTATCCCAATCACATGCACCTGAACCGGGGGAACCATGAAGACTACATCATGAATCTGAGGTACAGTCGACCCCGGGTCTCTGACTGGGGGCAGGACCCTCCGAAGCCACGCCCCCACTCTTTACTTAATTCTGCTGTTTGCACGGTGCAACACAATTTTAAGTGTTGCAAAAGAGTCCTGCCAGCCATAAAAGCGGCAGTGCTGATCCAAAGATGGTACCGGCGTTACATGGCCCGCCTGGAGATCCGGCGCAGATACACCTGGAGCATCTTCCAGTCCATCGAGTACGCGGGCGAGCAGGACCAGCTCCAACTCTCcagttttttcagtttcatgctGGACAACTTCACTCAGCTCAGTGGGAACGCTCCAGATCTGATCTCCCAATTCTTCGACCCTGCCACTGACCCGGTGCGTGACGAGGGGAAGCGAGCCAAGTACGAGCAGATCGAGGTGCCGGAGTCGTACTTGGGGCCCCGGCTGGCCTTCCCTCTCACGGTCACTCACACCAACGCGCTCCTCAGTGCCTTCAAGCAGCAGCAGGTTCGTGACGTCCGCAGGGCCTCCTCAGGTGCCGTGTCCACGCTGACCCAGAATCACGGCACTACACTGATATTGTGGGGTACCCTCCACGCCCGATACGTCCTTGAGTTGTTTTACGAAACCAAGAAATTCCTGAAGCAGATGCCCAACATCATTCACTTGTCAACTTACAGCAAAGAGATCACAGTCTGTGGTACGCTGTGCTGA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function
GO:0046914 transition metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85159 lncRNA downstream 157607 3226865 ~ 3228150 (-) True G68162
TU85111 lncRNA downstream 352993 3029109 ~ 3032764 (-) True G68124
TU85038 lncRNA downstream 580593 2776259 ~ 2805164 (-) True G68077
TU85251 lncRNA upstream 68681 3463435 ~ 3464792 (-) True G68224
TU85344 lncRNA upstream 562248 3957002 ~ 3957266 (-) True G68304
TU85365 lncRNA upstream 701461 4096215 ~ 4098475 (-) True G68324
TU85366 lncRNA upstream 701461 4096215 ~ 4098475 (-) False G68324
TU85367 lncRNA upstream 704810 4099564 ~ 4099927 (-) True G68325
AMCG00014172 mRNA downstream 10604 3372298 ~ 3375153 (-) True AMCG00014172
AMCG00014168 mRNA downstream 133910 3250317 ~ 3251847 (-) True AMCG00014168
AMCG00014167 mRNA downstream 148729 3229180 ~ 3237028 (-) True AMCG00014167
AMCG00014169 mRNA downstream 190643 3184977 ~ 3195114 (-) True AMCG00014169
AMCG00014158 mRNA downstream 433702 2945902 ~ 2952055 (-) True AMCG00014158
AMCG00014180 mRNA upstream 16224 3410978 ~ 3432333 (-) True AMCG00014180
AMCG00014178 mRNA upstream 60057 3454811 ~ 3462463 (-) True AMCG00014178
AMCG00014179 mRNA upstream 77167 3471921 ~ 3479370 (-) True AMCG00014179
AMCG00014177 mRNA upstream 85595 3480349 ~ 3487826 (-) True AMCG00014177
AMCG00014185 mRNA upstream 171757 3566511 ~ 3573447 (-) True AMCG00014185
TU85055 other downstream 556613 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 741850 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 843060 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 1467575 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 1483142 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 3983334 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 4022844 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 4742577 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 4761475 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 4988531 8383285 ~ 8384224 (-) True G69156

Expression Profile