RNA id: AMCG00014184


Basic Information

Item Value
RNA id AMCG00014184
length 1020
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00014184
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3489479 ~ 3511658 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGAGCCGGCGCGGCGCTCAGACTCGGGCATCTGGGCCGGGCCGGACCGGACCGGCGGGTTTGTGCGGGTCCGCCGATGCTGTGCACACAGTGTCTCACGCCGAGGTGCAGTTAGTGCGCAGACCTAGACACAGCATGGACGCGGTGGATCACAGAGCCGAGCACAAGTTCGCTGGCAAGAACCACCGGCCGGTCCAGGGCATTGTTCACCAGGAGGTGCAGATCCTGGGGGGTCTGGAGCCCAGAGGCGGCGATGGCGAAGGGGGCAGGCTGCTGGAGGTGGTCCTGTCCGGCGGGGCGCCCTGGGGATTTACTCTGAAGGGGGGTCGGGAGCACAGGGAGCCGCTGCTCATAACCAAGGAGGTAGTGCGGGACCCCAGGCCTCTGCAAGCGCTTGACATGCGGcattcctccctctctctggggtCTTTCATTAATGCGGACTCCAGCTGTCAAGCTGCTGTGAAAGAATTCGAGCTCCGATTAGTTTTTTGTCTCTCCCCTGAGATGCTGGAAGAAAGAGCAGCAAGGAGAGAGTTCGAATCGGCTGATTGCAAGATCCTGAGGGTCTCCCCCTCCCCACTGTGTGAACGGGCGGGGCCTGCGCCGGACCCCCCAGGACTCTGCAGTGACTCTCTCGGCCCACCGGAGGACCGGGGCTGCAGTGCTCCGTGCAGGTACGCTCCCAGTACGAGAGCCGCTTACTCGCTTAAACTCTGTAAACCTCGGGATTACGTGATGAAATCCATCACCGCTTCCCCTATCGATCTTAACTGGGACAGGGTTTCCATGGGATGTGACTGGTTTGTCACTGTCGGTCTTATGCGGCCTGACCTTGGCGTCCATATGTTCAGGGTGGAAGAGGGAAGCAAGGCCGCGTCCGTCAGGCTGCAGGCCGGTGATGAGATCGTGGGCATCAACGAGGTTCCCCTGAGTGGATACAGGCAGGAGGCCATCTGCCTGGTCAAGGGCTCCCACAGGACTCTCACACTGGTAGTCAAAAGACTCCAGAGCTGA

Function

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process
GO:0198738 cell-cell signaling by wnt biological_process
GO:1905114 cell surface receptor signaling pathway involved in cell-cell signaling biological_process
GO:0016055 Wnt signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85192 lncRNA upstream 5830 3410978 ~ 3483649 (+) True G68189
TU85168 lncRNA upstream 113690 3375585 ~ 3375789 (+) True G68167
TU85167 lncRNA upstream 114331 3374837 ~ 3375148 (+) True G68166
TU85150 lncRNA upstream 261353 3226859 ~ 3228126 (+) True G68153
TU85148 lncRNA upstream 262980 3224574 ~ 3226499 (+) True G68151
TU85329 lncRNA downstream 442708 3954366 ~ 3955265 (+) True G68292
TU85358 lncRNA downstream 572105 4083763 ~ 4083964 (+) True G68317
TU85370 lncRNA downstream 615818 4127476 ~ 4131718 (+) True AMCG00014196
TU85439 lncRNA downstream 781668 4293326 ~ 4293526 (+) True G68374
TU85441 lncRNA downstream 783159 4294817 ~ 4295819 (+) True G68376
AMCG00014173 mRNA upstream 17491 3462068 ~ 3471988 (+) True AMCG00014173
AMCG00014176 mRNA upstream 36989 3434157 ~ 3452490 (+) True AMCG00014176
AMCG00014175 mRNA upstream 80372 3398291 ~ 3409107 (+) True AMCG00014175
AMCG00014174 mRNA upstream 92356 3391607 ~ 3397123 (+) True AMCG00014174
AMCG00014170 mRNA upstream 111206 3377692 ~ 3378273 (+) True AMCG00014170
AMCG00014182 mRNA downstream 15359 3527017 ~ 3554734 (+) True AMCG00014182
AMCG00014183 mRNA downstream 47260 3558918 ~ 3559709 (+) True AMCG00014183
AMCG00014188 mRNA downstream 70961 3582619 ~ 3582945 (+) True AMCG00014188
AMCG00014187 mRNA downstream 83437 3595095 ~ 3615081 (+) True AMCG00014187
AMCG00014186 mRNA downstream 105569 3617227 ~ 3629082 (+) True AMCG00014186
TU84895 other upstream 779150 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 779150 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 779150 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 779150 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1359334 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1137542 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1137542 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3834537 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 3901982 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 6491400 10003058 ~ 10008648 (+) True G69406

Expression Profile