RNA id: AMCG00014201


Basic Information

Item Value
RNA id AMCG00014201
length 606
RNA type mRNA
GC content 0.59
exon number 1
gene id AMCG00014201
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4290944 ~ 4291549 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCAAAATCATCCCTGCTCAAAGTCATCCTGCTGGGAGATGGTGGAGTCGGCAAGAGCTCCCTCATGAACCGCTACGTCACCAACAAGTTCGACACCCACCTCTTCCACACCATCGGCGTGGAGTTCCTGAACAAGGACCTGGAGGTGGACGGACACTTCGTCACTATGCAGATCTGGGACACGGCCGGCCAGGAGCGCTTCCGGAGCCTGAGGACTCCCTTTTACCGCGGCTCCGACTGCTGCCTCCTCACGTTCAGCGTGGACGACAGCCAGAGCTTCCAGAACCTCAGCAACTGGAAGAAGGAGTTCATCTACTACGCGGACGTCAAGGAGCCGGAGAGCTTCCCCTTCGTGGTCCTCGGGAATAAGATCGACGTCACGGAGCGGCAGGTCTCCACGGAGGAGGCGCAGCTGTGGTGCAGGGAGAACGGCAACCACCCGTATTTCGAAACCAGTGCCAAGGACTCCACCAACGTGGCCGTGGCGTTCGAAGAGGCGGTGCGCAGAGTCCTGGCCACGGAGGACCGGACGGAACATCTCATCCCCACGGACACTGTCAACCTCCATAGAAAGCCCAAGTCTAGCTCTTCCTGTTGTTGA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07899 RAB9A, RAB9; Ras-related protein Rab-9A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85370 lncRNA upstream 159226 4127476 ~ 4131718 (+) True AMCG00014196
TU85358 lncRNA upstream 206980 4083763 ~ 4083964 (+) True G68317
TU85329 lncRNA upstream 335679 3954366 ~ 3955265 (+) True G68292
TU85192 lncRNA upstream 807295 3410978 ~ 3483649 (+) True G68189
TU85168 lncRNA upstream 915155 3375585 ~ 3375789 (+) True G68167
TU85439 lncRNA downstream 1777 4293326 ~ 4293526 (+) True G68374
TU85441 lncRNA downstream 3268 4294817 ~ 4295819 (+) True G68376
TU85500 lncRNA downstream 209315 4500864 ~ 4550002 (+) True G68422
TU85517 lncRNA downstream 292925 4584474 ~ 4588428 (+) False G68434
TU85518 lncRNA downstream 292925 4584474 ~ 4588428 (+) True G68434
AMCG00014200 mRNA upstream 46922 4242810 ~ 4244022 (+) True AMCG00014200
AMCG00014198 mRNA upstream 63301 4223544 ~ 4227643 (+) True AMCG00014198
AMCG00014199 mRNA upstream 70820 4205155 ~ 4220124 (+) True AMCG00014199
AMCG00014196 mRNA upstream 161276 4127631 ~ 4129668 (+) False AMCG00014196
AMCG00014197 mRNA upstream 172172 4106184 ~ 4118772 (+) True AMCG00014197
AMCG00014202 mRNA downstream 6792 4298341 ~ 4316679 (+) True AMCG00014202
AMCG00014207 mRNA downstream 169226 4460775 ~ 4498956 (+) True AMCG00014207
AMCG00014209 mRNA downstream 229253 4520802 ~ 4548407 (+) True AMCG00014209
AMCG00014208 mRNA downstream 277120 4568669 ~ 4583209 (+) True AMCG00014208
AMCG00014213 mRNA downstream 432105 4723654 ~ 4746002 (+) True AMCG00014213
TU84895 other upstream 1580615 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 1580615 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 1580615 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 1580615 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 2160799 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 357651 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 357651 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3054646 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 3122091 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5711509 10003058 ~ 10008648 (+) True G69406

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000201_00576577_00577506.mRNA True 2046 mRNA 0.39 3 CI01000201 576577 ~ 578901 (+)