RNA id: AMCG00014203


Basic Information

Item Value
RNA id AMCG00014203
length 1062
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00014203
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4293901 ~ 4297462 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCTGCGCAGACTCGGCAAAGTATGCGTGTCGTGAACGCAGCCAAAGTTACGGCGGTGGGTCAGGCGCTGAAAAATACACGATTTGCTTCTGCACGTACAGTACTCATTCATCAAGGACCACAGAGGAGATACACTAGACATGGTGAATAAATCAGTAGCAACACAGGAGATACACTAGACATGTATGTGAATGTATAAACTGCCGACGTGActataaaagtgtttttattttatttggcctTGGCTCCTTTAAGACATGCGGTGACGACATCAGCGTGCGCCGTCAGTGTTTGTggaaagaggaaataaatatagGTGTTTGATGCTGTCAGCGAACTGAGAAGTCAGAATGTCTGGAAGCTTCTACTTCGTCATGGTTGGCCACCATGATAATCCGGTCTTTGAGATGGAATTCCTTCCATCCGGAAAAACGGAATCGAAGGATGACCATCGGCATCTCAACCAGTTTATCGCCCATGCTGCCCTTGATCTGGTGGATGAGAACATGTGGCTGTCCAACAACATGTACCTGAAGACATTTGCAATGAACCCCTTCTATGAGCCAAATGCACAGATCCGATCAACAGCCTTTGACAGAAAAGTCCAATTTCTTGGCAAGAAGCACCTCttgagttaatccaggaagcAGCTCAGCTGTAAACTTGTGAATACACAAAAGGATTGTACGTCCGGTTCCTTGTTGAACTTTTCCTTACTTCTCTGAAATGCTCAGACCTCTCCAGAATCTCTTGTGCTTTCCCTGCAAGTCGGTATTTCAGTGTAAGTGTTGCTCAGaaaatttaattagaaatataAAGGATTTTCCCTGATAACTTCAGTTGTCCTCTTTAGTAAATCCCCAGTATTTGTTTCTCCTTCATGAACACAAGAAGACCAGTTGACAATCTCTTATGTCTTATTTAATAATTCTGCAAGGACAACTGTGTATGTGCTTCTGTGTTTATTATGTCTCTGCCTGTACATGCAATAGTGTGGTAGCTTTAAACTAacctaaataaaaatgagaaattcCAGTTAACAATGTGCAATTAGAAACCAA

Function

GO: NA

KEGG:

id description
K20301 TRAPPC2, TRS20; trafficking protein particle complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85381 lncRNA downstream 164160 4105518 ~ 4129741 (-) False G68336
TU85386 lncRNA downstream 164160 4105518 ~ 4129741 (-) False G68336
TU85378 lncRNA downstream 164160 4127222 ~ 4129741 (-) False G68336
TU85379 lncRNA downstream 164160 4127222 ~ 4129741 (-) True G68336
TU85367 lncRNA downstream 193974 4099564 ~ 4099927 (-) True G68325
TU85456 lncRNA upstream 843 4298305 ~ 4299684 (-) True G68386
TU85481 lncRNA upstream 119194 4416656 ~ 4416934 (-) True G68406
TU85564 lncRNA upstream 350240 4647702 ~ 4648211 (-) True G68474
TU85610 lncRNA upstream 588463 4885925 ~ 4886283 (-) True G68514
TU85633 lncRNA upstream 1036630 5334092 ~ 5334383 (-) True G68535
AMCG00014193 mRNA downstream 372586 3914862 ~ 3921315 (-) True AMCG00014193
AMCG00014191 mRNA downstream 462618 3807265 ~ 3831283 (-) True AMCG00014191
AMCG00014189 mRNA downstream 593140 3700069 ~ 3700761 (-) True AMCG00014189
AMCG00014190 mRNA downstream 615645 3657077 ~ 3678256 (-) True AMCG00014190
AMCG00014185 mRNA downstream 720454 3566511 ~ 3573447 (-) True AMCG00014185
AMCG00014205 mRNA upstream 22732 4320194 ~ 4325828 (-) True AMCG00014205
AMCG00014206 mRNA upstream 85141 4382603 ~ 4382845 (-) True AMCG00014206
AMCG00014204 mRNA upstream 86683 4384145 ~ 4389193 (-) True AMCG00014204
AMCG00014210 mRNA upstream 214359 4511821 ~ 4520399 (-) True AMCG00014210
AMCG00014211 mRNA upstream 262701 4560163 ~ 4565944 (-) True AMCG00014211
TU85055 other downstream 1464757 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 1649994 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 1751204 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 2375719 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 2391286 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 3080626 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 3120136 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 3839869 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 3858767 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 4085823 8383285 ~ 8384224 (-) True G69156

Expression Profile