RNA id: AMCG00014204


Basic Information

Item Value
RNA id AMCG00014204
length 4356
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00014204
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4384145 ~ 4389193 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTGCAGCAGTCACCAGTAACGCCATCGCAATTATAACGCATCTACACCAgagAAACAATTGCATTATGGATAAACCCCAAAAAGATGGCAGCGCCTGGTACAGCAATCCAGCCTATTCTAGGTATTGGCGCCATTACCAGCAAGCTATGAACTGGCACCACCGACACCACCAGGCCTATAAGAAGGCGCTGGAGGCCGTCTACTGTTCGCCCTTCCCCGCCTGGGACCCGGGGATGTCTCGGCGCTACGCAGACTGGAACGAGGGCGAGAGCACCCCCCAGCGTCCCCCCGCCCGGGAGCCAGGAAGGCGGGGGCCACAGCACACAGCGCACACACGGCGGAGCCAGGCCATGGAGGGCAAGGGCGAGACGGACAGCGAGGAGGACAGCAGCTCGGACAGCGAGATCGAGTGCGATGTCAGTGATATGGAGATCTCGGAGGAGCTGCGGCAGTACTTTGCGCAGACCGAGAGGCACCGGGAGGAGCTCAGTGAGTGATCGTGGAGAGGCGGGGCAGCGGTCGGCCGCAGGGAGCTGTTGGCACGTgcaggaggggagagagggatggtgGGACGAGAAATAGGCTTTCGTTTTGTTTCATACTAAGCCGAGTCACAGATGTGTTCATCctgattgttatttttgtttcattaactgAAAAATGTCTTTTATAGTGTTTGTTTCGCACAGAAGCTGGAGATCTGCAATAACATCGAAGACTTGATTTGACCTTTATGTTCTGGTGTGAAAACGCCCAtctgttgtaaaaataaaacccctGGGTAGAGCAGCGGGAAGGGAAAGGTTATGTGTCTGTCGCTCGGCGCGCTATCGCTGACTGAAGATTACACCGCTGTCTGCTGGGCTTCAATGTGTGGCCTTTGCGTCCAGCAATGCGTGAGATGAATCAGCCACCGGCGCAGCTTTTGTATCTGGTCGTTCCTTGAGAGACTTTGTGTCATTTGAAACGTCTCTCTCTGAATATTTGTACTTTCCGCAGCGACTTTCTTCTCCATAATGAAATGAAACGTGGTCGTCTCGTCGCCCTGCTCTCGGTGTGCAGGGATTAATCAAGCGCTCTGTGGGGCACGTGGTGTAATCCCACACAACCAGCGGTGCTCTCGTTGTCGAGCAGACCGTCTACAAATAGCTGTGAAGTTGCCCAGAGCACCGTTTACACGTTTCCAGCCCCTCAGAGCCTGGCGATACTGCACACGATCATTTGTACTGCGCTGTTACAGAGATGAGATGAGTTGTCTTTTGGATAAGTAGCCATGGAAGTAAGGGGCGGGGGGATGAGCTAAAAATGTGCGTAAGAGACGGTAGTGACCCTTGCAGAGGGGAAGAAGTGCTTCACTAACTTGCCTTCTGTCCAAGTGAGCGTTTAGATGTGTTTAGAAGAGCTCAGATGCATGTATCTGAGTGCAGGGATGTCCGTTTATTTACTAGTGATCTGTGTGGCCTGAGCAAGCACGAGAGCCGGGATGGAGCAGGCATTTGATTTACCACAAAGTTGATGCAAATTACAAGATTTGAATGTTCTAGAATGAAGATTAGCTGGTAATTTGATGGCAATTTCATTAGCATTTGAAGGCACACAAACGGATATATTCTGCTATAGTGCagcattttttaaagataaatcaTTCAATGTCACAATTTCGTGTTGCACTACAAATTGGCTTGGCTTTGCTATCTTTATTGATACCTTTTTAGGGATATAGACTTGCAAACTATAGATTTCGCACCCAGGGAGGTTTCACAGAACGGAGTTTATTCAGCGAGCACTCCGGTCCTTACCCGGCTCTCTAGGGGGGTTCAGCCCCTCCAGAGCGATCTCGCAACTTCAAGATTGTCCCTCCTTCCTGTGAACAGAGCTGCCATTGTTCCCCGCGCACAGCTGCCAAGAGGCAAAAATAAGTTATTCCAATTGTGTCCTGTGTGCCGCCGTGTCCAGAGTCCCGCTGTCGGACCAGTTCCTGTGCATTCGCCGCTCAGAAATggattcaaaatggaaaaataaataatgatgcgTTCGTTTGCTCTGATAGCGCCGGGGTGGTTAGGACGGTCACATGGAGATTGAAGCTGCAGCTCAGTACATCTGGGCAAAGTAAAAgtgtatttcattcatttacaCTGAGATATAACTGATACATCGCTTGAGAATGAACGTGTGAGACAgaatatatattagtttaattaaatgtacactttattttactgaaGCTTGTCATGAGAACTTCCCCAAAACAAGCAACATCTTTACAGCAGTCGtaccataaaataaatcacagtaaagTAGCTGCAGTGAAACTGGATAGTGTGTAATTTCCTGCCACGCCAGGAAAATGCAAACCAAGTCTGCACGGTCCTCCTTTACGGAGACATCCTCCCCATGTGATGCTGGAGCCTGCAGATCGTAACTGTCTCGGCCCTGTAGCTCTCGGCGCTGGTCTAATACAGGCCCTGGTGTCTCGCATGGTACTGCAGAGTCAGCTGGGCTGTGTTTAATCTCATTGCCCGAGTCCTGATCCCCACTAGAGACAGCTGCCACCGACTGATCCTGCACTAATTTGAACGGGATGGTCAGCAGCCTTGTCTTCCTGTCGTGTGGCTTTGAAGTCTGCAGCCGCGGGATTACGGGTCTGACGGTGTTTTCTAGGCCTCCTGCGCAACTGTGCGGTTGCGTCTAGTAGCTGACCATGGACACAGGGCCTTCTGTGCACCGCGCTGTACGGGATTAAACTGGGGCTTTCGCAGAGGAAGTCGCCCCTAACGAGGTGCCAGGGATGTGGGTTGGGGTCTGCCGGCACCGTGTGGGGGTTTGGGAGAGGTCTTGTCACGACTTGCACTTAGTCCTCAGTTAATTCTCGTCTCTTGAGAAGGGGGCTCTCCGGGGGCTTGGAGGGATGACCGTCTCCTCAACGAACCCCCACGCAGACCTCCTTTCAtccactttcattttaaaataccatcTTATAAAGTTTGCATCCCTGGAACGTCTGTCACAGGTTGATTCTGGGACACTGGCCAGTGGAGTCTGTAAATATGACTTTCCTCCGATGCCAGCATTGTTTTTTGCCGTTTAAAGGCAACTACATGTCGATCAAGTGGAGTGTCTTCTATACATGGGGGCTTGTGTTCAATAGACAATAAATCTAGGGCTTTACATTTCTCAAATCTGTCAGCCTGCTTGTTGTGTATCCGTAAAATACAGAGACCTGAACCCGGTGTCTGGATTGGGTGAGAGATTGTGTAGAACCTACTAAAAGGGAAATATTCGCTCAAATTCCAGTGTTTCTCCTGAACATCTGCACAGGGGGGAATAATATGCATACATTAACTTGTGAGGCAAATCAAACGCTGTTCTTGCTTTCCTCTGTATTTGTTGCTGAGAACGAAAGGGGGGCGTTGTATGTTTCCACTTTCTCTTCTCTGGATGTGACACAACGTTTCCATCTGAGTGGGCTGCATGGAGGCAGTGCCTGTGAAGCAGTTTAAAtcgtggagagagagagagagagagagagagagagaattttgaTAAATCATGTCTCTTAAAGGAGTATTAAATATTAGATTGAGGGTATTAAAAGTAGAATTAATTTGTGTGACAGTTAGATATTTTCTAGTAGAAAATCTATTTCTCTTTCGCCTTTTCGGTAAAATGTGGTTTCTCTATATGCGCTTGTGAAATCCCTTCAGTCCTCAGGTCACTGTTGCACCCCCACGCTGGCCCAACCAGtttgatgtttaattgaatatgtTTCGAAGATGAGcgaaaccaaacaaacaaggaaactaCTTTCCCACCGCGCCGTACATGACACAAATGGCTCCTTTATGCAAAGCTCCTGCTGACGTCAGCCACAGGACCAGAGCGACCCAATTAACAAGTCCAGTAAACGTGCCCTCGGTCACAAGGCCTGGGCAGTGGCACTTTTATAATGGTTGTGCGCGAACAAAGTGCGGCTGTCTGAATTCCCCTGATCGCCCCGAGCGGTTTCCTCGGACTCATGAAAAAATGGCCCAGATGTGACCGGAGTGATTTTGCAGTCGCGTTGCTTACAGCTGGACCACATTTCCTCTCTTCCACAGAGCAGAGAGCGTGTCCTCTGTCCTTCTTGCATTCCAGAATCGCCCCGCATTCTGCTCTCTGTTCTCAAGATGTTGGAGTTCCATTTGTTTGGGTCTTTCGAGTTAATCAAAGGAGTAACTTGAACATTCGGCATTATTTGAAAGATAAACTATAAAGACGATGAAACTGACTCAATTATCTTatccattattttttcttatgtttttcaaatgagaacaaaagaaagtgtccaatcgagaggaggccatttg

Function

GO:      GO:0008536

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85456 lncRNA downstream 84461 4298305 ~ 4299684 (-) True G68386
TU85381 lncRNA downstream 254404 4105518 ~ 4129741 (-) False G68336
TU85481 lncRNA upstream 27463 4416656 ~ 4416934 (-) True G68406
TU85564 lncRNA upstream 258509 4647702 ~ 4648211 (-) True G68474
TU85610 lncRNA upstream 496732 4885925 ~ 4886283 (-) True G68514
TU85633 lncRNA upstream 944899 5334092 ~ 5334383 (-) True G68535
TU85635 lncRNA upstream 1008635 5397828 ~ 5398235 (-) True G68537
AMCG00014206 mRNA downstream 1300 4382603 ~ 4382845 (-) True AMCG00014206
AMCG00014205 mRNA downstream 58317 4320194 ~ 4325828 (-) True AMCG00014205
AMCG00014203 mRNA downstream 86683 4293901 ~ 4297462 (-) True AMCG00014203
AMCG00014193 mRNA downstream 462830 3914862 ~ 3921315 (-) True AMCG00014193
AMCG00014191 mRNA downstream 552862 3807265 ~ 3831283 (-) True AMCG00014191
AMCG00014210 mRNA upstream 122628 4511821 ~ 4520399 (-) True AMCG00014210
AMCG00014211 mRNA upstream 170970 4560163 ~ 4565944 (-) True AMCG00014211
AMCG00014212 mRNA upstream 199204 4588397 ~ 4605961 (-) True AMCG00014212
AMCG00014215 mRNA upstream 470064 4859257 ~ 4864318 (-) True AMCG00014215
AMCG00014227 mRNA upstream 1255659 5644852 ~ 5655578 (-) True AMCG00014227
TU85055 other downstream 1555001 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 1740238 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 1841448 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 2465963 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 2481530 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 2988895 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 3028405 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 3748138 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 3767036 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 3994092 8383285 ~ 8384224 (-) True G69156

Expression Profile