RNA id: AMCG00014207


Basic Information

Item Value
RNA id AMCG00014207
length 3309
RNA type mRNA
GC content 0.39
exon number 9
gene id AMCG00014207
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4460775 ~ 4498956 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGCTTCTCTTGAAACAAAGATTCCTCCGATTTACCCAACATAGCTTTTGTATACGacctcatttaaaaaaaataatgtcccTGGAGTGGAAGAAAGCTGATGGCTAATCACTTTACACACTGCAGTGCGAGGACCCCTTAAATCCACCATGTGTTAAAGCTTCTTTTGGGGGGAAACGAATCAGTTCTCACAGTTCACATGCGTGCgggtctctgtttctctctccacacTGTAACTGGGTTTCCTTCTTCCACTGAACTATGATCCCCAGGACTGGAAAGTCTCCTGTTCATCCTCCACCGCGCACTAAAATGATCTACTGGGTTGTACAGAAAGCAATGTTGACTCCTCGGGGATCTTGCGTTTGACCAGCTTTCGCCCATGGAATAATTCAAAGAAGTGTGCAAATACCCACAGACATCAAGAGGAATGCATCGCCCGCTTGTCAAAATCCTGACAACCTTATTTGCATGTTTCTTAGAGCCCAACAACTTCAGGGTGGCAGATGCAAAGGAGCATGAGTCAAGATCTTCAGGAAAAAGCACCTCATTGACCATGTCTCCATCAGATTTTTTGGACAAATTAATGGGCAGAACATCGGGTTATGATGCAAGAATACGACCCAATTTCAAAGGTCCCCCAGTTAATGTTACCTGCAACATATTTATCAACAGCTTTGGTTCAATAGCAGAAACAACAATGGACTACAGAGTGAATATTTTCTTGAGACAGCAGTGGAACGACCCGCGGTTGGCCTATAGCGAATATCCTGATGACTCTTTGGACTTGGACCCGTCTATGCTGGACTCCATCTGGAAACCTGATTTGTTCTTTGCCAACGAGAAAGGGGCCAACTTCCATGATGTAACAACAGACAACAAGCTCCTGAGGATTTTCaagaatggaaatgttttgtacAGCATAAGGTTGACTCTTATCTTGTCCTGTCCAATGGATCTGAAGAACTTTCCTATGGATGTTCAAACCTGTGCGATGCAACTGGAGAGCTTCGGCTACACAATGAATGATTTGATCTTTGAGTGGCTGAATATAGGTCCGGTCCAAGTAGCGGACGGGCTGACTCTGCCCCAGTTCATCCTGAAAGACGAGAAGGAGCTGGGCTACTGCACCAAACACTACAACACAGGAAAGTTCACTTGCATCGAAGTCAAGTTTCACCTGGAGCGACAGATGGGATACTACCTGATCCAAATGTACATCCCCAGCCTGTTGATCGTAATCCTGTCCTGGGTTTCCTTTTGGATTAACATGGATGCAGCACCGGCGAGGGTGGCTCTGGGCATCACCACGGTCCTCACGATGACCACACAGAGCTCGGGGTCCCGGGCATCGCTGCCAAAGGTTTCCTATGTGAAGGCCATTGACATCTGGATGGCCGTCTGTCTTCTGTTTGTGTTCGCTGCTTTACTAGAGTACGCAGGAGTCAATTTTGTCTCACGGCAGCAGAAAGAGTTTCTCCGGTTGAGAAGAAGACAGAGAAGACAGAACAAGGAAGATGACGTGGTGAGGGAGAGCCGATTCAACTTTTCTGGGTACGGTATGGGACACTGCCTACAAGTCAAAGATGGCACAGCCGTAAAAACTGCCCCCCCCAATCCTGCCCCCCCGCCgctcagagacacagagaccaTTCGGAAAAAATTTGTCGACAGAGCGAAAAGAATTGACACAATATCCCGGGCTGCCTTCCCCTTGGCCTTCTTAATTTTTAACATCTTTTACTGGATTACGTATAAGATAATACGACACGAGGATATCCACAAAGAGTAGCTGAATGGGCTTGCTGGATCTATTAAACTCTCATtgccaaaaaaaattaaaataataaataaaaaacaaacaataaaagattTCATGCAACGGCGAACAATTCAAAGGTGTCCTGCTGTTTCTTGAATAATATTCACAGCTGAATAGAAAACATCTGCCTTGGAACCGAAGCAACATTAACTGGAAACGTACAATAACTTTGCCTAATACTTTCCACGGAAAAGAAGAAATGTTCTTCCGAAACTTAAGGTAGACATAAAAAGAGGCTCAAATGTTTCTGATAATATtcatgacaaacaaaacaaaactgagaagctaatgatatatttttctgttgttatttaaTGCTGCAGAGGTGTTTTGGTGACACTGATTTTAGTgattaaaagtacaaaatagTAAAGAATGGACCAAATTTTTCAAGATAAAACTGCCTTTCTATTTGTATGACTAATCCAATAACATTCCATTAATGCTGaaagagtaaaaacaaaaagggaggATTATTGTGTgataaatcagtttttaaataatgaagaaaataaaaatgtaactggatTTCAGAGAAGTTTATGTTTTGGGCTTttgaatttagattttttgatGATCCCTTTTATTCTATAGGCAGTTGCTAGATACATGCACACAATGTTACAGCTGAAGTCTACAACTGAGTCAATGTATCTGAAACATGTACCAGAACTCAATCAAAAATTTAACTTTCCACCACTTTCAAATTATAAACCCACTACTTTCCATTGTGTAGATGAATTTACACATTGAGATTGCATATTTGATGGGTGAATGGAATTGTATATTTAATCTAGacttgtaaaatgtgtgtattatctAAGATTCGATTTTACATATCAGTCTAGTTAATACACAAATTGTCTAATTTCAGACTTAAGCTGTAACAAAGTTTTTTAAGCTGTCTTTTACTCATCGGTACGCTTGGATtttctatgtattattatttttatgatttgcTTTGGTTTACAATGCATATAAAGGTGCCATACTGTATAATACCTTCAGTGCATTTCAACACCAttcatttatacaaatacaaattaagatttttttctttttaatggacCAGCTCAAATTAAAGTCTGCAGTTGAgctatttatcattttatattggTGTAGTTGCAATTGACAGCTTTTTGTAGGTAGGTTTGGTGTAAAGATGTTTACAAAACCTCGGATTTATATCTTCTTCAGTGACTATAAAGAAGTCATCAATCGATTTGAAATTTCAAACGTTTTGTGATTACATATCCCATTAACCCCTTCAGTGCCAACAGTATGTGCTTAGAATGGTTGTATTTCATACCGTATGTTCTGAAAGATGTCCTTCACACAgtatgtaagaaaaaaaaaaaagtatctatatatttaagatGTAAATGGGATTATGCCTAGAAAGAACTCACAGTGTTTTATTctcaaaagcatttattttgaacaggTCATCTTTGTTATACTTCAATAAAGCTAAATGTGCTTCATA

Function

GO: NA

KEGG:

id description
K05194 GLRA2; glycine receptor alpha-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85441 lncRNA upstream 164956 4294817 ~ 4295819 (+) True G68376
TU85439 lncRNA upstream 167249 4293326 ~ 4293526 (+) True G68374
TU85370 lncRNA upstream 329057 4127476 ~ 4131718 (+) True AMCG00014196
TU85358 lncRNA upstream 376811 4083763 ~ 4083964 (+) True G68317
TU85329 lncRNA upstream 505510 3954366 ~ 3955265 (+) True G68292
TU85500 lncRNA downstream 1908 4500864 ~ 4550002 (+) True G68422
TU85517 lncRNA downstream 85518 4584474 ~ 4588428 (+) False G68434
TU85518 lncRNA downstream 85518 4584474 ~ 4588428 (+) True G68434
TU85563 lncRNA downstream 148754 4647710 ~ 4648213 (+) True G68473
TU85589 lncRNA downstream 286370 4785326 ~ 4785601 (+) True G68497
AMCG00014202 mRNA upstream 144096 4298341 ~ 4316679 (+) True AMCG00014202
AMCG00014201 mRNA upstream 169226 4290944 ~ 4291549 (+) True AMCG00014201
AMCG00014200 mRNA upstream 216753 4242810 ~ 4244022 (+) True AMCG00014200
AMCG00014198 mRNA upstream 233132 4223544 ~ 4227643 (+) True AMCG00014198
AMCG00014199 mRNA upstream 240651 4205155 ~ 4220124 (+) True AMCG00014199
AMCG00014209 mRNA downstream 21846 4520802 ~ 4548407 (+) True AMCG00014209
AMCG00014208 mRNA downstream 69713 4568669 ~ 4583209 (+) True AMCG00014208
AMCG00014213 mRNA downstream 224698 4723654 ~ 4746002 (+) True AMCG00014213
AMCG00014214 mRNA downstream 338767 4837723 ~ 4851433 (+) True AMCG00014214
AMCG00014216 mRNA downstream 452374 4951330 ~ 4958249 (+) True AMCG00014216
TU84895 other upstream 1750446 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 1750446 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 1750446 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 1750446 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 2330630 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 150244 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 150244 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 2847239 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 2914684 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5504102 10003058 ~ 10008648 (+) True G69406

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060228 True 1926 mRNA 0.48 10 NC_007116.7 22515347 ~ 22544151 (-)
grasscarp (Ctenopharyngodon idella) CI01000339_01327907_01343305.mRNA True 3460 mRNA 0.44 11 CI01000339 1327717 ~ 1344940 (-)