RNA id: AMCG00014209


Basic Information

Item Value
RNA id AMCG00014209
length 4299
RNA type mRNA
GC content 0.44
exon number 15
gene id AMCG00014209
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4520802 ~ 4548407 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGCGTAAAACAGCCTGTAATCCTATACACACCGGAGCCAAAATGGCGAACATTAGAACTCCAGTTTCATTAGACGTCTTACTGCATAAACTTTAGCTCTGCCCTCCTAGGCTACTGTCACTTTGAACATGGCGGATGCTGGGACTAGGGAGTCCGATCTGGAAATCGCGAAGAAAGTTGAAGAGACGAGACAGAGATTCAAAACTGAACACGTCCAAGACTCGACAGATAAGTACGATGCCAGAGACGTGGAGAGGCTGCAGAAAGATGACCTTCTGGCTGAAAGTTACCTGACATGGCGACACTACATTGTGGATGACGCTCTAAAGATGATTGACGAGAGCTTTCAGTGGAGAAAAGAGTTTCAGGTCAATGaTCTCACCGAGAGCAGCATTCCCAAGTGGATGTTTGAAACCGGTGCCGTCTATCTGCATGGCTACGACAAGGAGGGCAACAAATTATTTTGGTTTAAGGTGAAGCTTCATGTAAAAGATGCCAAATCTGTCATCGACAAGAAGAAATACGTTGCTTTCTGGCTCGAGCGCTATGCGAAGAGGGAACCTGGGATGCCTCTGACGGTGGTGTTTGACATGTCCGAATCGGGGTTAAGCAATATTGATATGGACTTTGTGAAATACATCATCAACTGCTTCAAAGTCTATTATCCTAAGTTCCTTTCTAAAATGATCATGTACGAGATGCCGTGGATTATGAATGCTGCCTGGAAGATTGTGAAGACGTGGCTCGGCCCAGAGGCGATAAACATGCTCAAATTCGTTTCCAAGAACGAAGTGCAAGAATTTATTGGTGCCGAATACCTTCCGACGTACATGGGAGGGACGGACACGTTTAAATACATCTACCCTCCGCTGCCAGACGATGACTTCCAGTCTCCCATCTGTGAAAACGGCCCCATCGCCAGTGAGGATGAAAACGAAGGCAAAGACGGAGAATCTGAAACCAAATCTGAGACCAATTCCCTGGCAGACCCTACACAAAAGCCAAAGAAGGTGAACTTTCCAGCAGACGCTCTGAAATCGGACGAATACGACAAGGGGGATGCGACTGATAAACCCAGAGCGGCCAGGAAACCTTTGACGACGTTTAAGGGGCCCTTGCTTTACATAAGCCCAGCTGAGGAGCTTTGCTTTGGATCCAAAGACAACGAAAAGAAATGCCTGATTATTCTAAGCAACGTGACCAAAAATCAAGTGGCGTTTAAGGTGAGAACCACGGCCCCCGAAAAGTACCGGGTCAAACCGAGCAACACCAGCTGTGAGCCCGGTGCTACCGTCGACATTATTGTGTCTCTTCATGGAGGGTTCCTAGCCTCCCCCCAGGATCGGTTCCTGATCATGGCAGCTGAAATGGACCTGACCACGACGGCTGGACCGCAGGAGCTCGTGCAGTTCTGGAAAGAAgttccaaaacagaaaataatggaacACAGATTACGGTGTTATGTTATTGAAAGCTGTAAGCCCACCAGTTTGTTTGGTGAAAGCCCCCTCAACAATGTGAAGAACAGCCAGGAAGACTTGCATTCCAAACTCCTCAGAGTCATGGCCAGCAGCAAGAGACTCGAAGAGCAGGTCGACCAGTGCCTGTGGTTTCAGAAGATGTTGATGGGTCTGGTGTCGCTCTTGATGGCCATCACGTGTTCCATGCTGTATCTCCTGTACATGGACGGCAGTCGCTTCTAAGATGGCCGCCTGCCTGGATCGGAGATTTGCCCACGAGCGGCTGCGTGGCCAGTCGGCTGATACAAAGGGCCCTTACACAATGTAGAGACCAAATAATGAAGctaattgtatgtgtgtggagGCCTGAACTGAGCCTTGAGGTCTGTAAGTCTTAAATATGAACGGGAATGAAGAACTTGCCATGTGCTGAACGGATCGAAGCTTTCTGCCACCGCTGAGGTGCATTCGAAGAGTTAAATGATACTCAGGACTTCAATGAACCATGTTTTTCTAGTATTCTTCATGGAATTCCTTCCAGCAAAGGTCCACTGTGAggttttgtgctgtttttgtttatttatcaacCTGATGtatgtgggtttttttttgttcaggcTTACTTTGGTACCATTTTTAAAAGGCCGTTACTGTTTGTGTGTCcgatgtttgttttgtttgtgtatctgtttattttccGGCATTAAAATAAACCCACTGTTGTTGTATTAGTAGTTTAGAAAACTCACCACAGTACGTCCGCTGTCGTTGTCACTGCCTGCTCCAGAGAaatcaacaatatttattttcatccaaCCACAATAAACTTGAATGCAAGAAATATTGTATCTTAATAATGATTTACAGATTCGAACAGGACGGTTTATGGTCTTGGAGATATTTATGACAGGAAATTGTGCCTGTCTTTTGCTCAGATCAGTGGAATAATAATCCTGTGACCGATTATCTAATGTTACgtgtacaaatatgtaaataaatacatctgcagAGTGGAGGTAATGAGGGGGGAATGACAAGCTCAGCCTTTGACCTCTCTCTGATGGAATTAAAAATTATCTTAAATTGGCTGATTTCTATTTGGGATTGTGATTTCTAAACCCTTCGCAGCTGGGTGTTGTGTTATATAGTCCGGCCCTTAATTGATTCAtatttagtataattattaacaCCAGGAAATGTTTTTGGCGTTAACGATTGGCTGTCTACGTGAAATGAAGGAAAGGATAATTCCTCAAACCGTCCTCAAAACGCAAACCGTATGGCGTCGACTTCAGGAGCTTTTCATTGCTGTCTGGGCTGTGTTTTGGAGCTTTGGGACATCATTCTGCCTGGAACACATAAGCTGTGAGAAGACGCTGCCACCTGCCACCTCCTTACAGAGACATCCGCCTGGAAGGCTGAGGAAAGGTACTGGACTCCGCATGGTGCCCTGGGCGGGAAGGTGGAACACCATTGGGAGAGAGGCGTGTTCTTCGGCTGACATGGGCACCAGCAAGGAGGCATTTGCTTTGGTAATATTTGGACCAAGTTGACTTATTGTTGAGTCCACACCTAGTAGGAAAACTCCTCTGCGTGCAACTCTTGAAAGTAATTGACGAATACTCATTTCCACGACcagttaaatataatatttgtttggtTAATCGTGAACACAGCAGTATAGTTTTCGATTCTTGAAAAAGTATGAGtttgcttacacacacacacacacacttctctcaGGTACTCTCTTGTTCAGATTAGTCCAATTCCAACAATGTAATTCAGAGCTTCTACTGCCGTATTTCTTTACATTGCTTGTGCTTCTGTTTCCTCTTAGACTTACTGTTATCCTGTGTATACTGTAAATACCGAACAGCATTCATGATGAACTGCCTTCTGTTGaaatctttatatataatttaaatgtttaatgatgaatatttttatttgatgctTGTACTTCTCTGTTTATTATTAGGCAGACAAAAGCTTCCCCCTTGGCGATCGTTCGagcttgttgtgtttgtatatttcacACATATCTGCCAGGCTGAAGGCTTCTAATTTAAGAGAGTCTGTAGACGAGTGTGCTTGGTGGCTTGTTCTGTTTATTGTAATCACTCGGAGCGTGCAACTAAAAATACCAGCCCAATTACCACTGGGATGTAAAAGGATGATGCAGGAGAAGACTCAGAGACTGCAGTTGCAAGAcaggaaatatttaaacagtttgAGTAGCCCAGCCGTGTAAAAACCTGTTTCGATGGACGTGTCAGTGTGGGCCGCTGTAGATAATCCTGTTTTCCTGGtatgtacatttaattgtgCAGCCTTGCATTTCCGTTTGCTTTTTACAGACACTTCAGTTTTGTAAGTTTACTAgaagaaatgtattcattcagtGACATTCAAATACACTAGACATGACTCTCGAGACATTGTGTGATCGATTGATAACAAGCTTGTGGCAATATTTCGGTGGggttgatgtatttgtttgagcATAGGTGGTTTTCCTCTATGAGAAGGATGTGGGCTTCTGCAGGTTTGAATTGGCATGCTGGTTATAAATCAGCACTGTCCACAAACTTGAAAGTGCACTTTTAACTCCTGTCATCTTTCTCCTCAGAGACCTCCCTTTGTATTCAGCTGGTGAGGGCACACGTAATGAAGTCTGCCCTTTCAAGGTAGTGTTAACAGGGTGATGGTCCTAAAACAGAAGTGCTCAGACTTGACTGTGCTTCCATCcttttcataagaacataagaaagtgttaAATCAAGAgaaggccattcaccccatcgtgctcgtttggtgtccattaataactgagtg

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85441 lncRNA upstream 224983 4294817 ~ 4295819 (+) True G68376
TU85439 lncRNA upstream 227276 4293326 ~ 4293526 (+) True G68374
TU85370 lncRNA upstream 389084 4127476 ~ 4131718 (+) True AMCG00014196
TU85358 lncRNA upstream 436838 4083763 ~ 4083964 (+) True G68317
TU85329 lncRNA upstream 565537 3954366 ~ 3955265 (+) True G68292
TU85517 lncRNA downstream 36067 4584474 ~ 4588428 (+) False G68434
TU85518 lncRNA downstream 36067 4584474 ~ 4588428 (+) True G68434
TU85563 lncRNA downstream 99303 4647710 ~ 4648213 (+) True G68473
TU85589 lncRNA downstream 236919 4785326 ~ 4785601 (+) True G68497
TU85603 lncRNA downstream 308622 4857029 ~ 4857230 (+) True G68509
AMCG00014207 mRNA upstream 21846 4460775 ~ 4498956 (+) True AMCG00014207
AMCG00014202 mRNA upstream 204123 4298341 ~ 4316679 (+) True AMCG00014202
AMCG00014201 mRNA upstream 229253 4290944 ~ 4291549 (+) True AMCG00014201
AMCG00014200 mRNA upstream 276780 4242810 ~ 4244022 (+) True AMCG00014200
AMCG00014198 mRNA upstream 293159 4223544 ~ 4227643 (+) True AMCG00014198
AMCG00014208 mRNA downstream 20262 4568669 ~ 4583209 (+) True AMCG00014208
AMCG00014213 mRNA downstream 175247 4723654 ~ 4746002 (+) True AMCG00014213
AMCG00014214 mRNA downstream 289316 4837723 ~ 4851433 (+) True AMCG00014214
AMCG00014216 mRNA downstream 402923 4951330 ~ 4958249 (+) True AMCG00014216
AMCG00014217 mRNA downstream 513425 5061832 ~ 5062272 (+) True AMCG00014217
TU84895 other upstream 1810473 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 1810473 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 1810473 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 1810473 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 2390657 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 100793 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 100793 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 2797788 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 2865233 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5454651 10003058 ~ 10008648 (+) True G69406

Expression Profile