RNA id: AMCG00014211


Basic Information

Item Value
RNA id AMCG00014211
length 1979
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00014211
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4560163 ~ 4565944 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGCAAAGTTgcagctgaaaacaaaaaccatttGGGCAGAGTCAGAGCTGCAGGCACCAGGGCTGGGCTACAGCACGACTCCCTGTTTATCTTCCCTGAAGTTCATGATCCTGGTGCTTCCAGTGCAACAACATGAAGAGCCTTTAACAATCCTGGCACTCGAGACGCTGAACTGAGAGCCGTTGTCTTCTCTGCTGTCTGTACCTGTGCGTGGCGAAGACACAAAGTTCAGCATGAATCCTGAGCCGGGCAGCACAGACAGCCAGCAGCCCCAGGCTACCCGAGCCCGGCCATCAGATGACTACTTTTCCAACCCACTGATGAGTGATTTCGAATCTGATTGGTCTCCGATTCACGATGCTGCTTTCCAAGGGCGCCTTCTTTCCCTGCGCAGACTCATCGGCCAGGGCTGCAGTGTGAATCTAGCGACACTGGACCGAGTGACGCCTCTGCACGGGGCTTGTCTGCAGGGACACATTGCTTGTGCAAgacttttaatacaaaatgggGCAAATGTGAACTGCGCTGCTGTGAGCTGGAACACCCCACTGTCCGACGCCTGCGCTGGGGGCAGAGTGGGCTGTGTGGAGCTGCTGCTGAAGCATGGGGCGGACCCCCGGGTCAGCGACCTGGCATCCCCCCTGCACGAGGTGGCCAGGAAAGGGGCCAACGTGAACAGCAGTAAAGACCTGGATTCGCCGCTCCACGCAGCCGCCAGACACTCCAGACTAGACTTAGTCCAGGTGCTCCTCAATCACGGGGCCGACGTGACGTCCAGGAACACCGATGGAAAGCGGCCTGTGGATCTCGCTGCTCCTCACAGTGACGTGCAGAAGCTCCTCCTGCAGAGAGAAGGACCCCTGTCTTTGGCGCAGCTCTGTCGTCTTTCTATTAGGAGTCTTTTGGGGAGATCAAGACTCAGAGAAATATCCGGACTGCCTGTTCCAACTGAACTGAAACACTTTCTGATGTACAAGTAGAACTACagacatttgattttgttttgacgGAAAGCTATctttttataatgatatataaatgCCTATTAATAGTACAGTGTGATGTGGTTCACATCCTGTAATCTTCACCCAGGGAGAGAATGGAAGATGATACAGTTTAACTATTAAACATATTGTCTACTTTATTTGATGCTGGTTTGATGATTTTTAAAGGTGCTACctgttgcattttccttttgaaagcaaacaaattattacaaaatccCTATGATATTACAGTTTCCAAGGAATCTATTTCTTACAGCCTGATTTATGTAAATAATCTTGCATTGAGGCAGATATAACATTGCAAACTCCATCAGTCATGAGTTGAAAATTGTGCAGCACTCATTTCAGTCAGTGACTATTCTTGAAACTAGAATAAAGGGTCAGGATTTGAACTGGGATCTTAATCAATAGTgactgttgctgttttgtttctgttttgtcttgCCTTTGTTGACCACCCTTGTTTGTTAAGGATTGTTGatcaattaaactgaaaactgtTTCCTCTTCCACGCCCTTTTGAACACGGAAAGCCACAATATTCCCAGGCCTTGTGGACAGTGAATTCTTGGTGGCAGCAGGTGGAGCTGTTGCTTCATGGGAACAGAAAGAGGGAAATCTCCAAAACCAGGGAATCATATCAAACCACCAGCGGCTCCTTCAGCGATACCATGTGATACAGTGATGTACAGAAACGTGGAGAATTTAACTTTGTCATCCCACAGGGCCCGGGGTGTGTTGATTACTGCTTGCTGTCAACTAAAGCAAGATTACTTAATCACATTCATACCCTGGGTACCTCAAAACAAGCTTCGCGATTCGGCATATAGAGACTGCCCATCAGATGgcaagataattaaaaacatcatgATTGGTTCCTGGCTTTGAATAAAGATGCTTTCTTTCACGTTTCACAGAGTGTATTGGAACAATCCCTGTACTCCAGTCGATATAGTATTTACAATCCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85481 lncRNA downstream 143229 4416656 ~ 4416934 (-) True G68406
TU85456 lncRNA downstream 260479 4298305 ~ 4299684 (-) True G68386
TU85386 lncRNA downstream 430422 4105518 ~ 4129741 (-) False G68336
TU85564 lncRNA upstream 81758 4647702 ~ 4648211 (-) True G68474
TU85610 lncRNA upstream 319981 4885925 ~ 4886283 (-) True G68514
TU85633 lncRNA upstream 768148 5334092 ~ 5334383 (-) True G68535
TU85635 lncRNA upstream 831884 5397828 ~ 5398235 (-) True G68537
TU85645 lncRNA upstream 1021555 5587499 ~ 5587992 (-) True G68547
AMCG00014210 mRNA downstream 39764 4511821 ~ 4520399 (-) True AMCG00014210
AMCG00014204 mRNA downstream 170970 4384145 ~ 4389193 (-) True AMCG00014204
AMCG00014206 mRNA downstream 177318 4382603 ~ 4382845 (-) True AMCG00014206
AMCG00014205 mRNA downstream 234335 4320194 ~ 4325828 (-) True AMCG00014205
AMCG00014203 mRNA downstream 262701 4293901 ~ 4297462 (-) True AMCG00014203
AMCG00014212 mRNA upstream 22453 4588397 ~ 4605961 (-) True AMCG00014212
AMCG00014215 mRNA upstream 293313 4859257 ~ 4864318 (-) True AMCG00014215
AMCG00014227 mRNA upstream 1078908 5644852 ~ 5655578 (-) True AMCG00014227
AMCG00014228 mRNA upstream 1093128 5659072 ~ 5678472 (-) True AMCG00014228
AMCG00014226 mRNA upstream 1113272 5679216 ~ 5698927 (-) True AMCG00014226
TU85055 other downstream 1731019 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 1916256 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 2017466 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 2641981 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 2657548 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 2812144 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 2851654 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 3571387 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 3590285 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 3817341 8383285 ~ 8384224 (-) True G69156

Expression Profile