RNA id: AMCG00014213


Basic Information

Item Value
RNA id AMCG00014213
length 3595
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00014213
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4723654 ~ 4746002 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTGCCTGGAGCCGTGCAAGGAAGCCTGGGACCTGAAGGGGAATCAGTGCCAGAGCTTGTGTGAGCCTCTGTTTCCCAAGAAGCACTATGAGTGTCTGACGAGCTGCGAGTTCCTGAAGTCCGTCGAGGCGCTGAAGCAGGGCGACTGTCCCGCCCCGGAGAAGGCCAGTGGCTTCGCGGCCGCCTGTGTGGAGAGCTGCGAGGATGATGAGGAGTGCTCAGGGGTGAAGAAGTGCTGCTCCAATGGCTGTGGCCACACGTGCCAGCTGCCCAAGAACCTCTACAAAGGAGCTCCACTAAAGCCCCGGAAGGAACTGAGCTTCACTGAGCTTCACAATGGCCAGCTGGAGATCAAGTGGTCGTCCAAGTTCAACATCTCGGTGGAGCCGGTCCTCTACGTCGTGCAGAGACGGTGGAATTATGGGATACATCCCAGCGAGGACGACGCCACTGAATGGCAGACTGTGGGGCAGACCACAGAGGAGCGAGTGAAGCTGCTGGACATCAGAGCCAGCAGGTGGTACCAGTTCAGGGTGGCTGCTGTCAACGTTCATGGCACGAGAGGCTTCACCGCCCCCAGCAAGCACTTCCGCTCCTCCAAAGATCCCTCTGCCCCCCCCAGCCCTTCCAGCCTGAAAATCAGTAACATGACCTCGGGCCAGGACGGTGCCCTCTCCGCACGGCTCAGCTGGGATCTCACGGAGGAACCAGACATCCCTGTGCACCATTACAAAGTGTTCTGGAGCTGGACAGTCAGCGGGAAATCCATTGTGCCGacaaagaagaagaggagaaagaCCACCAAtgggTCCCAAAACTATGTGGATCTGGAAGGGCTCCAGCCAAACAGCAGCTATATGGTGGAGCTGCAGGCGGTGACATACTGGGGACAAGTGCGTCTGAAGAGCGCCAAGGTTTCTCTTCTCTTCAGCACCATGAGATTGAATGACACGAAAGAACATTCTTCCACTTCTTCAAAGATGAGGAAAGGAGGAGACGTTCATCCCATCAGCTCTAACCCAGGAAAGAGACCAAACGGCCCACTAGAGGTGGGAGCTCCTTTCTACCAAGATGGACAACTTCAGGTCAAGATCTACTGGAAGAAAAGAGGCGATCCCACGGCCAGCCGTTACCACGTCCAGTGGATGCCAGAATCCTGCAGTCACAACGAAACAAAAGGACCAGAGAAATCGGTTACACAGGAAAACTACATCAACCTCCACGGACTGCTGTTTTCCTGCAAGTACAAAGTGACAGTCCAGGCGATGAAGTCAAAGGGTCGCTCAAAGGCTGAGACCACCAGCTTCTCCACGCCACCCTGCTCCACCCTGAAGGGCAAGAGCCATAAACACATCAGCTGCCCTGCAGAGGGGGGGCTTCCAAAGGTCCTGGCCAAACCCGAGAACCTGACAGCTTCCTTCTTCATCCACGAAGGGAATATAACCGGAAATTTCTTTTGGAGGGTGTCGAGAGTACCAGTCCACCAGCGTGTCACCGGCTTTCAGGTCACCTGGGCCGAGGTCACCACGGAGAGCCGGCAGAACAGTTTGCCGAACAGTATCATCTCCCAGTCCCAAATACTGCCTCCGGACCACAGTCTCCTCATAGTCTCCAATTTACGACCAGCAACCTTTTACAGACTTGAAGTGCAGGTCATAACAACTGGAGGGGAAGGCCCAGcaactgtaaaaacatttcaaacacctGACATTTCACCGGTTCTGCAGCACAGTAAGCACATTTTGACTCTTAATTCACTGTATAGCCTACAAAAGGATGCAAGTGAGTCCCCATGAGAAGGAAggcctttttatttaataccaCTGTGgtctacaaatgacaaaaaaccCTGTCAGATATACAGGGATATGGAAAATAACAAGATGGTCTCTTGTGCCAGTACCATTTGTTCTCCCATAAATAGTTATGTAGCACTCAAGCATTACATCACTGGACATATGGCAGTTAAAACAACTAACAAGCGCCATTAAGGGCTGTAAACGCGGGCCAACGTTGGTCTTCTGGCCATTTGTGCTGAGcgcttaattgtttttttaagactgtttatttatttatggcttTGCGACATGGGACTTGGCTGGAATCACAATCCCCTTAACCGTGTCACTTCCCATCGCCTGTGATCGTCAAAGCCAGTTGTCGACTGGGATAATCCTCAAATTAAtccctttttaaaatggtttccggtaaaaaaaggttttgaaatCATGCCTCCTCTTCAATTAAAcctataaaaaaatgtatttataatatattgcaaaaaCAAGTGAACCATATAACACGTTTTGCAGATTGCTTGTTTATGTCGGCTTCATTTTTAAGATTCTGTAATGGCCTGCTGGATGTTATATGAGCCTGTGTGCatggtttgattttaaatgaattatataattCCCTTATACGTTTTATTTATTGGTGACGGGGTATCTGGTTAATAAGGTTAATTCGAAAGCCTTCAAAAAGGGCTATTGTGTGGAAATTAATTGTGATGTGTTCCAGCATTCAGATCTGATATGTCTGAAATGATTCAAGTGCTTTGTTTACacagtttgtgttgtttttgttgttgtttagggCCCAGACTCAGACAACACCATCAGCACCATCATAAGCAATCTTCAGAAAAGCACTGAAGACTTCCTTGCATCGGTGTGGCAGAGACCAGCTCAGCCCCAAATCGCaccacaaataaatcaatacttaaatataaaaaggaaatagaCTATGTAATTGCGCTAATCCACTGCAGGTGGGTTTTCTCTTCCTCCGGACAGCGCGTCACCGATCACATCGCCCACCCCCGCTCCACTCACTGCGTGGTATTCACCCGATTTAACGGCACAGCCCACAACGGACACACTGCCAATCCCAAAAACCTGCCGGACGAATCACTGGGGCAATTGGAGATCTCTTCACATGCGCCCTGCGGAGATTTGCACTTCTTTGGCTCTCAAATAAAGTTACAAAACAACCATGTAATCCATAAGCTTCGAGTATGTCAAGTCAGACATAAAACTAGAGTGAGGGGAGGGGGTGTAGAACTTCAGAGTTGAGAGAATTTCAATCGCCATCTTTAAGACCAGCTTTGGATTGGACTATTTATTATATCGTACTCCTTAATCCCAATTGGCGCTTAGTAATAATTAACTAAAACCGATTTACGATGTAACTAATGCCTGAGCGGTTTATCAGAGAGTACGGCATCACTTAGGATATTGCATGTTGGAacccatttaatttaaactgtaaatgcGTAGCAGCGACAAACTGAATCTTACAGTCAATGGTCTTGCATGACAAAACTTAGTGTTCTGTTCTAGGCATGAGATGAACTGTCTGTGTTACCTCCTTTGAATATATTAGCAAACATTCAATTAACAGATTAACAGAGGACTCCTTGGGGGGggattatttactttatattaatGGAATGATACCGTAGTGTGGAAATGACAGAATTGTGTATTTACTAAACTGGCTGTAGAAATCATGCTCATGTTACAGTCATtaaatgtcaatatttatttatgtatgtattacaacatgtttggtttgtgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0010466 negative regulation of peptidase activity biological_process
GO:0005576 extracellular region cellular_component
GO:0030414 peptidase inhibitor activity molecular_function

KEGG:

id description
K23413 ANOS1, KAL1, WFDC19; anosmin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85563 lncRNA upstream 75441 4647710 ~ 4648213 (+) True G68473
TU85517 lncRNA upstream 135226 4584474 ~ 4588428 (+) False G68434
TU85518 lncRNA upstream 135226 4584474 ~ 4588428 (+) True G68434
TU85500 lncRNA upstream 173652 4500864 ~ 4550002 (+) True G68422
TU85441 lncRNA upstream 427835 4294817 ~ 4295819 (+) True G68376
TU85589 lncRNA downstream 39324 4785326 ~ 4785601 (+) True G68497
TU85603 lncRNA downstream 111027 4857029 ~ 4857230 (+) True G68509
TU85636 lncRNA downstream 705286 5451288 ~ 5451521 (+) True G68538
TU85659 lncRNA downstream 911248 5657250 ~ 5704009 (+) True G68559
TU85700 lncRNA downstream 1033376 5779378 ~ 5782386 (+) True G68589
AMCG00014208 mRNA upstream 140445 4568669 ~ 4583209 (+) True AMCG00014208
AMCG00014209 mRNA upstream 175247 4520802 ~ 4548407 (+) True AMCG00014209
AMCG00014207 mRNA upstream 224698 4460775 ~ 4498956 (+) True AMCG00014207
AMCG00014202 mRNA upstream 406975 4298341 ~ 4316679 (+) True AMCG00014202
AMCG00014201 mRNA upstream 432105 4290944 ~ 4291549 (+) True AMCG00014201
AMCG00014214 mRNA downstream 91721 4837723 ~ 4851433 (+) True AMCG00014214
AMCG00014216 mRNA downstream 205328 4951330 ~ 4958249 (+) True AMCG00014216
AMCG00014217 mRNA downstream 315830 5061832 ~ 5062272 (+) True AMCG00014217
AMCG00014218 mRNA downstream 333507 5079509 ~ 5079783 (+) True AMCG00014218
AMCG00014220 mRNA downstream 368648 5114650 ~ 5118152 (+) True AMCG00014220
TU85565 other upstream 71690 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 71690 4649200 ~ 4651964 (+) False G68475
TU84895 other upstream 2013325 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 2013325 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 2013325 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 2600193 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 2667638 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5257056 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 9590856 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 10929629 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile