RNA id: AMCG00014214


Basic Information

Item Value
RNA id AMCG00014214
length 2608
RNA type mRNA
GC content 0.49
exon number 9
gene id AMCG00014214
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4837723 ~ 4851433 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTAAAGCCACGCCGTCGGATTAACTAGTGACAGCAATGCAGATTATTTCACTTGAATTAAACGCCATGAATTTTGCATCCGACCCACCACGCAGGGCAGTGTGGGACTTGTGATTTTGAACGGGGTGGCAATAGGGTGGTTGTGTCGCTGTGCATTTAATGCACATCTGCAAGTAAACCCCAcgtccctctcctctccctctccctctctctcttctctctctgacAGGAAGATGAAGACCACGCTACTGCTGTGCATGTGTCACATTTGTGGTGTAGCTACACTTGCTAAGCAACCCAACTTCGTGCTCATGATGGTGGATGATTTAGGAATGGGGGATTTGGGATGTTATGGAAACACAACTTTAAGGACCCCTAACGTCGACCGTCTCGCCCAGCAGGGTGTGAAGCTGACGCAGCACATTGCCGCGGCCCCCCTGTGCACCCCAAGCAGGGCGGCCTTCCTGACGGGACGATACCCAGTTAGATCAGGCATGGCAAGCTATGGCAAAGTAGGGGTTTACATATTTGCTGCTGCTTCCGGTGGTCTCCCTGCACAGGAGGTAACATTTACTAAGCTTGCAAAACAAAAGGGCTATTCGACAGCACTTATAGGGAAATGGCACTTGGGTTTAAACTGTGAGAGGAGCGATGATTTTTGCCATCACCCAAGCAGCCACGGCTTTGATTACTTCTATGGCATCACCATGACCAATCTGAGAGACTGCCAGCCAGGCCATGGCACGGTCTTCTCCAATGTGGTGGCGCACGTTCCCTTCCAGGGCATCGGACTGGCTGCTCTCACCGTACTGGTCTTGCATGTGTTGGGCATTTTTACTCTGTCCTGGAGAATATTGTCGATATTCTCACTGCTCGTTGCCCTGTCTCTGCTCCTCTTCGCTGGGTTCGTTTTCACGTTCCCTTATCTCAACTGCCTCCTCATGAGAAACCATACCATCGTCGAGCAGCCATTTTCCGCCGAGAGCTTGACCCAGAGGATGACGCACGAAGCGGTGGACTTCCTGAGGAGGAACACTGAACGGCCATTCATCCTCTTCTTCTCATTTGTCCAAGTCCACACTGCGCTCTTTGCATCCGAGAGGTTCAGAGGGAAGAGCGCGCATGGCGTGTACGGAGACGCTGTGGAGGAGGTGGACTGGAGCGTCGGACAGATTGTGAACACGTTGGACAGCCTCAACCTGACTGAGAACACTCTGGTGTATCTGACCTCAGACCAGGGCGCCCATCTGGAAGAGATCTCCATCCGAGGGGACGTTCACGGAGGATGGAATGGCATATACaaagCTGGGAAATCAACTAACTGGGAAGGAGGAATTCGTGTTCCCGGGATTGTGAAGTGGACTGGAGTGTTGCCTGCTGGCATACAGGTGGATGAGCCCACCAGCAACATGGACATCTTCCCTACCGTGGTCAGCCTGGCAGGATTGCAGATGCCCAGAGACAGTGTAATAGACGGACACGACTTGATGCCCTTGCTGCAGGGCCGGGTGACACGGTCGAATCACGAGTTCCTCTTCCACTACTGCAACGCGTATTTAAACGCAGTTCGGTGGCACCCAAGACAGAGTGATTCTGTCTGGAAAGCCTTTTTCTTCACTCCCGATTTCTACCCCGAAAATTCAACCCTttgtctgcacacacacacgtgtttcTGCACAGAGGAATACGTGACGTTCCACGACCCCCCGTTGCTCTTCGACCTTTCCAAGGACCCGACCGAGAGCAATCCTCTCACGCCAGAAACGGAGTCCAACTTCCAGCCGGTCCTGGATGCCATTCGCGAGGCCGTGGCCCTTCACACCAGCACCCTGACCGTGGCCCCCGACCAGTTCTCTTTCAGTAACTCTGTGTGGAAGCCGTGGCTGCAGCCCTGCTGCTCCTCGCTGTCCgagttgtgtgtgtgcgatGAAGACCGGTCCACAGCTAACCAATAAAGACGTGCAGTTTTCTCATCCAGACTGGGCTGAGACGGGAAAGGTGTCGAATGAACGCTTTTTTGCTGTGTCAAAGGAACGCTTTTTTGCTGTGTCGAATGAACACTTCACAGCTACTTCTCTGCTGTGTCGAATGAACAACTTCTCTGCTAATTCTCAGGTGTGTCGAATGAACACTTCTCTGCTGTGTCAAATGAACACTTCTCAGGTGTGTCAAATTAACCTAGTTGgcttgttttggaaatgtatagATGGCTTTTGGAGAGTTGTTTCTATCGCAcatgtgtaataaatacatttggaagaagGTGAGTTTTGTTAAACTCAGTAGTATATTAATAGCAATTTGGTAGTACTGACTATActaagtataatttaaaagtattcaatcttgaaatagtttaatgaaaatgCTGTTTGCTTCCttatattgaaatgcaaagaaataaacTCGATGTGATGATATAAACCGCAGTCTGATCCATATGAAATGGGACTGTGGCATTGAGTAAAAATTGAATTTATTCACCTAAAGATATTAGTATAACAATCCATTTTGTGCGTGATTGAGGCAGTTATGAAAGTTTATATTGCCTGCATGccaattatttctgtatattttgtattaaaaaaaggctgttaaaaaataacaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG:

id description
K01131 STS; steryl-sulfatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85589 lncRNA upstream 52122 4785326 ~ 4785601 (+) True G68497
TU85563 lncRNA upstream 189510 4647710 ~ 4648213 (+) True G68473
TU85517 lncRNA upstream 249295 4584474 ~ 4588428 (+) False G68434
TU85518 lncRNA upstream 249295 4584474 ~ 4588428 (+) True G68434
TU85500 lncRNA upstream 287721 4500864 ~ 4550002 (+) True G68422
TU85603 lncRNA downstream 5596 4857029 ~ 4857230 (+) True G68509
TU85636 lncRNA downstream 599855 5451288 ~ 5451521 (+) True G68538
TU85659 lncRNA downstream 805817 5657250 ~ 5704009 (+) True G68559
TU85700 lncRNA downstream 927945 5779378 ~ 5782386 (+) True G68589
TU85751 lncRNA downstream 1045637 5897070 ~ 5956185 (+) True G68623
AMCG00014213 mRNA upstream 91721 4723654 ~ 4746002 (+) True AMCG00014213
AMCG00014208 mRNA upstream 254514 4568669 ~ 4583209 (+) True AMCG00014208
AMCG00014209 mRNA upstream 289316 4520802 ~ 4548407 (+) True AMCG00014209
AMCG00014207 mRNA upstream 338767 4460775 ~ 4498956 (+) True AMCG00014207
AMCG00014202 mRNA upstream 521044 4298341 ~ 4316679 (+) True AMCG00014202
AMCG00014216 mRNA downstream 99897 4951330 ~ 4958249 (+) True AMCG00014216
AMCG00014217 mRNA downstream 210399 5061832 ~ 5062272 (+) True AMCG00014217
AMCG00014218 mRNA downstream 228076 5079509 ~ 5079783 (+) True AMCG00014218
AMCG00014220 mRNA downstream 263217 5114650 ~ 5118152 (+) True AMCG00014220
AMCG00014219 mRNA downstream 277738 5129171 ~ 5130645 (+) True AMCG00014219
TU85565 other upstream 185759 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 185759 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 2127394 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 2494762 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 2562207 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5151625 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 9485425 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 10824198 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile