RNA id: AMCG00014215


Basic Information

Item Value
RNA id AMCG00014215
length 711
RNA type mRNA
GC content 0.59
exon number 5
gene id AMCG00014215
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4859257 ~ 4864318 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGCTTTTAAACCTGTCTTTTGCTGCCTGTGGGTTCCTGGGGATCTACCACCTCGGCGTGGCCACGGCCCTGCAGAGACACGCAGGGAAACTGCTGACAGCCGCGCAGGCCTTCGCTGGGGCCTCGGGGGGGGCACTGGTAGCTGCAGTACTGGCAACTGTGCCAGACAAATTAGAGGGAAGGCATAGAGCAGATCCTGCCCCCCGATGCCCACGAGGTCGCCGGGGATCGGCTGCACGTGTCCATCACGCGAAACGGGAGCAAACCGCCTGGTCTCGAGCTTTGCCTCCAGGGAAGACCTTGTTAAGAGAAGTACCGCGGCCTCCCGGGAGTAATGGCCTCACATCTGACTCCtgctctttgtttgtttgtgtgaaggTCCTTTTAGCCAGCAGTTTCGTTCCTGTTTATGCGGGGATGAATGCCGTGGAATATAAAGGAGAGAAATGGATTGATGGGGGGCTGACAGACAGCCTTCCTGTTCTCCCGGTGGGTCGGACGATTACTGTCTCGCCTTTCAGCGGCCGTCTTGACATCTGTCCTCAACACGATGGCCTCCTGAATCTGCGCATCAGACTGTCAGCGGACAACCTGACAAGGCTCGGCCAGGCCCTGTTCCCTCCCGAGCCGGCGCGACTGGAGACGCTGTGTCAGCAGGGACACGACGACGCCGTGCGGTTTCTGAAGAAGGAGAACTGGCTCTGTTGA

Function

GO: NA

KEGG:

id description
K11157 PNPLA4; patatin-like phospholipase domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85564 lncRNA downstream 211046 4647702 ~ 4648211 (-) True G68474
TU85481 lncRNA downstream 442323 4416656 ~ 4416934 (-) True G68406
TU85456 lncRNA downstream 559573 4298305 ~ 4299684 (-) True G68386
TU85386 lncRNA downstream 729516 4105518 ~ 4129741 (-) False G68336
TU85610 lncRNA upstream 21607 4885925 ~ 4886283 (-) True G68514
TU85633 lncRNA upstream 469774 5334092 ~ 5334383 (-) True G68535
TU85635 lncRNA upstream 533510 5397828 ~ 5398235 (-) True G68537
TU85645 lncRNA upstream 723181 5587499 ~ 5587992 (-) True G68547
TU85674 lncRNA upstream 792987 5657305 ~ 5703927 (-) True G68572
AMCG00014212 mRNA downstream 253296 4588397 ~ 4605961 (-) True AMCG00014212
AMCG00014211 mRNA downstream 293313 4560163 ~ 4565944 (-) True AMCG00014211
AMCG00014210 mRNA downstream 338858 4511821 ~ 4520399 (-) True AMCG00014210
AMCG00014204 mRNA downstream 470064 4384145 ~ 4389193 (-) True AMCG00014204
AMCG00014206 mRNA downstream 476412 4382603 ~ 4382845 (-) True AMCG00014206
AMCG00014227 mRNA upstream 780534 5644852 ~ 5655578 (-) True AMCG00014227
AMCG00014228 mRNA upstream 794754 5659072 ~ 5678472 (-) True AMCG00014228
AMCG00014226 mRNA upstream 814898 5679216 ~ 5698927 (-) True AMCG00014226
AMCG00014231 mRNA upstream 962441 5826759 ~ 5843215 (-) True AMCG00014231
AMCG00014230 mRNA upstream 981970 5846288 ~ 5850922 (-) True AMCG00014230
TU85055 other downstream 2030113 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 2215350 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 2316560 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 2941075 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 2956642 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 2513770 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 2553280 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 3273013 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 3291911 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 3518967 8383285 ~ 8384224 (-) True G69156

Expression Profile