RNA id: AMCG00014217



Basic Information


Item Value
RNA id AMCG00014217
length 441
RNA type mRNA
GC content 0.55
exon number 1
gene id AMCG00014217
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5061832 ~ 5062272 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGAATGTAAACCTGATTTTCTGGATCGCCACCCTGGCTGTGAGATTTACCCTCGTCAACTGCCAAGCACAATATTCCATCGTCACCACAAACTACGGGAAATTACGGGGATTAAAAACGCCGCTGCCCAACGAGATCCTGGGCCCCGTGGAGCAGTACCTCGGAGTTCCCTACGCCTCCCCCCCCACCGGAGACCGCCGCTTCCAGCCCCCCGAGCCGCCCGCCCCTTGGCAGGGAGTCAGGAATGCCACACAGTTTGCCGCCGTTTGCCCCCAGTACCTCGAAGACAGGGCTTTGCTCAACGACATGTTGCCGGTGTGGTTCACCGCCAATTTGGATACAGTGGTAACCTATGTGCAGGATCAGAATGAAGACTGTCTGTACCTTAACATCTATGTGCCCACTGAGGATGGTAAGTCTCACATGATTAACCTTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85603 lncRNA upstream 204602 4857029 ~ 4857230 (+) True G68509
TU85589 lncRNA upstream 276231 4785326 ~ 4785601 (+) True G68497
TU85563 lncRNA upstream 413619 4647710 ~ 4648213 (+) True G68473
TU85517 lncRNA upstream 473404 4584474 ~ 4588428 (+) False G68434
TU85636 lncRNA downstream 389016 5451288 ~ 5451521 (+) True G68538
TU85659 lncRNA downstream 594978 5657250 ~ 5704009 (+) True G68559
TU85700 lncRNA downstream 717106 5779378 ~ 5782386 (+) True G68589
TU85751 lncRNA downstream 834798 5897070 ~ 5956185 (+) True G68623
TU85765 lncRNA downstream 950410 6012682 ~ 6013059 (+) True G68635
AMCG00014216 mRNA upstream 103583 4951330 ~ 4958249 (+) True AMCG00014216
AMCG00014214 mRNA upstream 210399 4837723 ~ 4851433 (+) True AMCG00014214
AMCG00014213 mRNA upstream 315830 4723654 ~ 4746002 (+) True AMCG00014213
AMCG00014208 mRNA upstream 478623 4568669 ~ 4583209 (+) True AMCG00014208
AMCG00014209 mRNA upstream 513425 4520802 ~ 4548407 (+) True AMCG00014209
AMCG00014218 mRNA downstream 17237 5079509 ~ 5079783 (+) True AMCG00014218
AMCG00014220 mRNA downstream 52378 5114650 ~ 5118152 (+) True AMCG00014220
AMCG00014219 mRNA downstream 66899 5129171 ~ 5130645 (+) True AMCG00014219
AMCG00014221 mRNA downstream 445752 5508024 ~ 5550098 (+) True AMCG00014221
AMCG00014222 mRNA downstream 533183 5595455 ~ 5607754 (+) True AMCG00014222
TU85565 other upstream 409868 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 409868 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 2351503 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 2283923 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 2351368 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 4940786 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 9274586 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 10613359 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile