RNA id: AMCG00014221


Basic Information

Item Value
RNA id AMCG00014221
length 4088
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00014221
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5508024 ~ 5550098 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCGGCCAAAGCCAAGGCTGGTCCCGGGGTGAACAGCGACTGTGGCTCCTGCAGGGACGGTGGCCACGGCGCCGGCGCTGCCAGTCCTGGCGCCGCACAGAGCGGCGCGGCAGCCCCGGCGCACAGGACCTACACGCTGGAGCAGCTGGACACGGTGGCCACTGTGGCCCCGGCTTGGGTCGTTATACGTGCCCTGGCGTTCCCTCTGCAGGTGCGGCGCCTAATTACTGTAACTGCCAAGCGCTTGTTAACGCTGCCGCTTCTGCTCGTACTGTTTAGTAGTgtgttcagtttttctttctcctctttgCCTGCAGGAACCGGGACGTTTGGCCGCGTCTTTCTGGTGAAGGACAAGACCACGAGAGGCTTCTTCGCTCTGAAGGCGATGAAGATCCCTGACGTGATCCGACTGAAGCAGGAGCAGCACGTCCACAACGAGAAGGCTGTGCTGGCGGAGGTCAACCACCCCTTTCTCATCAGGCTATTCTGGACTCATCACGATGACCGTTTCCTCTACATGCTGATGGACTACGTGCCCGGAGGGGAACTGTTCAGCTACCTGCGCAATATGGGCCGCTTCAACAACAGCACGGGACTGTTTTACTCTGCGGAGATTGTGTGTGCCATCGAGTACCTGCACTCCAAAGAGATCGTTTACAGAGACTTGAAACCGGAAAATATTTTACTGGACAGAGAGGGCCACATGAAGCTCACGGACTTTGGGTTCGCCAAGAAACTGGTAGACAGGACCTGGACGCTGTGCGGGACTCCCGAGTACTTGGCACCGGAAGTGATCCAGAGTAAAGGCCACGGCCGGGCGGTGGACTGGTGGGCCTTGGGGGTCCTGATCTTCGAGATGTTATCTGGGTACCCACCGTTTTTTGATGACAATCCATTTGGCATTTACCAGAAGATACTTGCTGGCAAACTGGACTTCCCCCGGCATCTGGATTTCTATGTAAAagacCTCATTAAGAAGTTCCTTGTTATTGACCGAACAAGAAGGCTGGGAAACATGAagaACGGAGCAGATGATGTGAAGAAACACAGATGGTTTAAGTCTATAGACTGGGATGCCGTTCCTCAGCGAAAACTGAAGCCACCGATCGTACCCAAGGTATCTCATGACGGCGATACGTCAAACTTTGAAGCATATCCAGAGGACGAGTGGAAGAAGGAGCCCCCCGTCCCGCCTAAGGATCTAGAGATATTCAAGAACTTCTGATCAGCACTGTGAGACGCGCACCTTCAGATGAAGACTTCCTGGCCGGAGGAAACGGCTCCAGCAGAAGCACGGTGTCCTTCGGCCCCCTCAACCCCCGAGCCTCTTAATATATGCAACAATCCAAGGTCCTCCTGATACCAAAACACCgcgttcatttttattttgccattgtCGTTTATGTGACGAAGAGGAAAATGGTTACACTAAGaacaattgtaaaaatgtacaaaccatcgttttgttttttataacttTTGTTTCGGTGTGGAAAGTTTTTATTTCACGTAAAATAGGAAATTCATGACGTTTTACCTCTAGGTTTGTAAGCgagttgtacattttaatgtctgCAGGTTTgctgaatgtgtatatattgcagGGGAGAGGTACCAAGCACAAGAGTGGCTGAGTCTCATGTATTCTTTGGTTTCTGAAGCGATGAGCCTTCGCTTCGGTTTGGAGCAGAGACTTTATCTGTGACACGCATATCAAACTCTGACATCACTGTAGAAATCCTTCGCTGGCCACTAGGGTTCACTCGTCGATAACGATCTGAATAATCCTGCGAATCCCGTGCGTCCGCccttatttatttcaggtttcTTGAAAAGAGGGATTCTGTCTTTATTTAACCATTCTGAAAGCGTGTAACgtacaaaaaaaagcactgctTGCGTTAAACACTTCCAATACGACCCTGGTCTTATTTGTTGGCACAAGACGTAAGGGTGAACGCTGTTTTGCTGAATTGGAGCACTTGCTGTGAAATGTGGCCTTACTTTCTCTCTCTAAGGAATATTATTAACAATGGCTGAAGTCAGAGAAAGCAGTGGTTTGGAAATTAAACTTCAGGGGAGGGTGACTTTTGCAGCCCCACTCTGAGCGTATTTGTGACTTCTGACCTCGACACGCCTGTGTTGCACGTGGGAAGAAACGGTCTCTCTAAACCGAGTGGGGCTCGTAACCCAGACTTTCATTATCGATACGACTTTGAAGCTAAAATTGTCGGCAAGATTCACCTCTTAAAACGGTCTGCTCAGATGCCTGCTTGTTCACCGTCTGTCCATTCTCAGATGCACCAGTTCCCTGTGTTGACAACGTAGTGCGTTTGTAATGGAGCGAAGCAGGAAGTGGtcagcctgtgtgtgtctctaggTTTTGTGTAATTAAGCTGTTGTGGACCAATTATCAGTGCTGGAGTCCAGAAAACAACAGGTGTTCTTGATTTATAAAGTGTCTGACACGACGAACACCACATCCACATCTGCAAAGCTTTAAAAGTGTCGCAGTGGTCTCACAGAAGAGGCGCTGTGTATGTGGCGGTGAAGGACGGTCCTTCGGCTGTTTAATAGCGACACGCCAcatattcttttattatttattttatttttcattttatctgtgtgtgtttgtgtgacataATGAGCATTAAAGAATTGACCAGAGTGCCCTGGATTCCCCCCCATTTTAAGCAATTTTCCAATCTCCAAAAGGTtaaggtattttatttgtatgttttttgttttgtgtgtttttttttctagcaaaaaacaaataatggtaTTTTTGTACCATTCGAGCTGGAGACaatgtttggttgtttgttttctcaccCTTAACCAATGCCTTATGTTTGTGTTCTGAATTAATCTTTTATTGAACTGCCATTCTTTCCAAACTGTGTGTATCTCAAAGTGTGGCTTGAATCAGTGTTACCTACTTAGACTACTTGTAAGAATCATCTTCTCCTAGTCCTGTAAAATCATAGGTCTTTCTCCCATAGAAATGTCACTTCTTCCAAAACACACTGAAGAATAAAATCTCCTTTCAGAGTGAATTATTTTGCCTTAACCTCAGCTGTCATGTTCAGTTACTATGTTCACCACAATGATCTCAGATTTGTATCGGTCTGTCCTCGCAAGGTGGTGATTTTGCTCTGTGTACTTCAGATAGTTCAGACCATCCCGAATGTAATCCATGGCTACGCTTAACGACTGGATGCATGCTTTGAAAAgtgctgttaaaaaaaagttagttttGTGCTACTGACACTTCGAGATCAATGACCATAACTACTGGTGTAACTGGAACGCGAATGTAGTTGCACTTAAATGCAGTTTCCAGGTGATTTTAAGAAGTGGACGAGCGATTGAGGACTGTTAGTATGAAAGAATTGGTGCAGAACTGACTTGAAATCCAGTTTACAGGGGAACAGAGTTTAAAACCAACGCAAATCTACAAATATATTCCGTAAATGCCTGCCTTGAAGCACCCACACGTCGTTCACTGTGTCAACTCCTGTTTGGATCTACAATATTAGTGTTAAAGTCGCTACGATAGGATTTGCAATCAAATGCACCAGCCGTTACTACTGGGAACTCTGGTGACCTTGCTTTCTTCACTCACACCTGCATCACGAACTATCGCAGAGCAATCTGTATGCTTTCAGACCTGCGATACTCCGCAATTTCATCTGCACCCCGGGACTAGTGTGTGATTAAACACTACTGACAGTAACGGCAAGGAAACCATCCTGGGATGGTACTTGAGTCCATGGACGGGGCGGTCTTGGAAGAAGATCATTTGTATACTGCACATTTGTTtagttgtgtgtgagtgttaacTCTAAGGGACGCAATATGGGACTCCCTGATGTCTAAAAGCCTTCAGTAAATACTTTCCTTTTTGGTTAATAATACGGTTTgttcaaatcattaaaaaatgttctaaACATTGAATGTGGATGTTTtctttagtgtgtgtttgtgtgtgtattccaTAGAGCCAGTCTACTCTGTAAACCCacagtgtgatttaaaataaaatactgtgtgtgaaccagaaaacaatatata

Function

GO: NA

KEGG:

id description
K19584 PRKX; protein kinase X

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85636 lncRNA upstream 56503 5451288 ~ 5451521 (+) True G68538
TU85603 lncRNA upstream 650794 4857029 ~ 4857230 (+) True G68509
TU85589 lncRNA upstream 722423 4785326 ~ 4785601 (+) True G68497
TU85563 lncRNA upstream 859811 4647710 ~ 4648213 (+) True G68473
TU85517 lncRNA upstream 919596 4584474 ~ 4588428 (+) False G68434
TU85659 lncRNA downstream 107152 5657250 ~ 5704009 (+) True G68559
TU85700 lncRNA downstream 229280 5779378 ~ 5782386 (+) True G68589
TU85751 lncRNA downstream 346972 5897070 ~ 5956185 (+) True G68623
TU85765 lncRNA downstream 462584 6012682 ~ 6013059 (+) True G68635
TU85767 lncRNA downstream 504437 6054535 ~ 6056347 (+) True G68637
AMCG00014219 mRNA upstream 377379 5129171 ~ 5130645 (+) True AMCG00014219
AMCG00014220 mRNA upstream 389872 5114650 ~ 5118152 (+) True AMCG00014220
AMCG00014218 mRNA upstream 428241 5079509 ~ 5079783 (+) True AMCG00014218
AMCG00014217 mRNA upstream 445752 5061832 ~ 5062272 (+) True AMCG00014217
AMCG00014216 mRNA upstream 549775 4951330 ~ 4958249 (+) True AMCG00014216
AMCG00014222 mRNA downstream 45357 5595455 ~ 5607754 (+) True AMCG00014222
AMCG00014223 mRNA downstream 57675 5607773 ~ 5643489 (+) True AMCG00014223
AMCG00014225 mRNA downstream 171799 5721897 ~ 5739921 (+) True AMCG00014225
AMCG00014224 mRNA downstream 205431 5755529 ~ 5774761 (+) True AMCG00014224
AMCG00014229 mRNA downstream 316807 5866905 ~ 5879257 (+) True AMCG00014229
TU85565 other upstream 856060 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 856060 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 2797695 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 1796097 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 1863542 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 4452960 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 8786760 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 10125533 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile