RNA id: AMCG00014224



Basic Information


Item Value
RNA id AMCG00014224
length 750
RNA type mRNA
GC content 0.60
exon number 4
gene id AMCG00014224
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5755529 ~ 5774761 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTCTCATCTGTAAACTCCTGTGTTTGTCCACAGTGCAGTTCAGCTACCTTGACCTGACATCCCTGAGGTCCGTCCATCAGTTTGTGCAGAGGTTTAAAGACAGAGGCCTCCCACTTCATGTTCTTGTCAATAATGCTGGCGTCATGTTGGTTCCAGAGAGAAGGACAGAAGATGGCTTTGAGGAGCACATTGGATTGAACTACCTAGGGCACTTCCTGTTGACACAGCTCCTCCTGGACACCCTGAAGACGTCTGGGACCGAGGAAGCCTGCGCCCGAATCATCACCGTCTCTTCTGCGACGCACTACGTGGGAGAGATCACCCTGGAGGACCTACAGAGCAGTGCCTGCTATTCCCCCCACAGCGCCTACGCCCAGAGCAAGCTGGCCCTGGTCCTGTTCACCTATCACCTGCAGCGGCGCCTCGCGGCGGAGGGCAGCCCAGTAACGGCGAACACGGTGGACCCCGGGGTGGTGGACACAGACCTCTACCAGAACCTCAGCATTCCTGCTCAGCTGTGCAAGTGGCTGCTTGGCTGGCTGCTGTTCAAGAGCCCGGCGCAGGGGGCCTCCACGTCGGTCTACGCCGCGGCGGCGCCGGAGCTGGAGGGCGTGGGGGGCTGCTACCTGTACAATGGTCGAAGGACAAAATCTGCGGACACCTCGTACGATGAGGAGTTGCAGAGGCAGCTGTGGGTCCGGAGCTGCGGCCTGGTGGGGATCCGGGAGCCGAGCTGGAGGGCCGACTGA

Function


GO: NA

KEGG:

id description
K11170 DHRSX; dehydrogenase/reductase SDR family member X

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85659 lncRNA upstream 51520 5657250 ~ 5704009 (+) True G68559
TU85636 lncRNA upstream 304008 5451288 ~ 5451521 (+) True G68538
TU85603 lncRNA upstream 898299 4857029 ~ 4857230 (+) True G68509
TU85589 lncRNA upstream 969928 4785326 ~ 4785601 (+) True G68497
TU85563 lncRNA upstream 1107316 4647710 ~ 4648213 (+) True G68473
TU85700 lncRNA downstream 4617 5779378 ~ 5782386 (+) True G68589
TU85751 lncRNA downstream 122309 5897070 ~ 5956185 (+) True G68623
TU85765 lncRNA downstream 237921 6012682 ~ 6013059 (+) True G68635
TU85767 lncRNA downstream 279774 6054535 ~ 6056347 (+) True G68637
TU85787 lncRNA downstream 298956 6073717 ~ 6110306 (+) False G68649
AMCG00014225 mRNA upstream 15608 5721897 ~ 5739921 (+) True AMCG00014225
AMCG00014223 mRNA upstream 112040 5607773 ~ 5643489 (+) True AMCG00014223
AMCG00014222 mRNA upstream 147775 5595455 ~ 5607754 (+) True AMCG00014222
AMCG00014221 mRNA upstream 205431 5508024 ~ 5550098 (+) True AMCG00014221
AMCG00014219 mRNA upstream 624884 5129171 ~ 5130645 (+) True AMCG00014219
AMCG00014229 mRNA downstream 92144 5866905 ~ 5879257 (+) True AMCG00014229
AMCG00014237 mRNA downstream 258676 6033437 ~ 6054435 (+) True AMCG00014237
AMCG00014243 mRNA downstream 460042 6234803 ~ 6239921 (+) True AMCG00014243
AMCG00014253 mRNA downstream 956863 6731624 ~ 6732517 (+) True AMCG00014253
AMCG00014259 mRNA downstream 1264993 7039754 ~ 7046875 (+) True AMCG00014259
TU85565 other upstream 1103565 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 1103565 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 3045200 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 1571434 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 1638879 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 4228297 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 8562097 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 9900870 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile