RNA id: AMCG00014227


Basic Information

Item Value
RNA id AMCG00014227
length 2266
RNA type mRNA
GC content 0.58
exon number 11
gene id AMCG00014227
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5644852 ~ 5655578 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttattttgtcatccattcattcatttgctGCGGAGCTTTCCTGGAAATCTCTGGGTTGATGCGGTGTGATATAGTTTTCCTTGCACAGCTGCTGGACTCAATACGTGTCAGCCTAAAGGTTATTATTGGTCTCCATTCCTCTGTTGAAGTCATGGACCACAAACTAAACCCAAGGTTGTGTGTGCTGGCACTGCTGTTGTGCGTGGGGGGTAAAACTGCCCGTGCGGAGCGGGACTCTCGGCCCAACTTCATCCTGATGATGGTGGATGACTTGGGAATCGGCGATGTGGGATGTTATGGCAATGACACAATCAGgACCCCCAACGTCGACCGTCTCGCCCAGGAGGGGGTGCAGCTGACTCAGCACATCGCCGCGGCGCCCCTGTGCACCCCGAGCAGAGCGGCCTTCCTGACCGGCCGATACGCCATCCGATCAGgGCTGAGCAGCACTGGGCGAGTGCAGGTGCTGTTGTGGAATGGGGGGGCGGGTGGCCTGCCTCCCAATGAAACCACGTTCGCCAAGATCCTGCAGCGCCAGGGCTACACCACGGGACTCGTAGGGAAGTGGCACTTGGGTGTGAACTGCGAGAGCCGCACTGATCACTGCCACCATCCCAACAACCACGGGTTCAATTACTTCTACGGGCTGCCCTTCACGCTGTTCAACGACTGCAGGGCTGGGGAGGGCCGGGACGTGCTGGTCGACCTGCAGGACAAGCTGTGGGGTGCGTCCCTTGCGCTGAGCCTGGCGGTGCTGACGCTGGTCGGCGCACGGCTGACCGGCCTGCTGGCCACCGGCTGGAGGGTGATCGGGTCGTTGGCCACGCTCTGCATCCTGGGCTTCGCGGCGTGGCTGATGCCCTTTCATCTCATCCGCACCTGGAACTGCATCGTCATGAGGGACGGGGACGTGGTCGAGCAGCCCATGGACATGGAGACCCTGGGGCCGCGGCTTCTACACGAGGCTGAAGACTTCATCGAAAGaaaccAACAAAGACCCTTCCTGCTGTTCTTCTCCCTGGCCCATGTCCACTCGCCCCTGTTCATCTCCAAAGACTTTGTTGGAAAGAGCAAGCATGGGTTGTACGGAGACAATGTGGAAGAGATGGACTGGATGATAGGAAGAATCTTGAACGTTGTGGAAAAGCTGGACCTGTCAAGGAAGACGCTGATGTACTTCACGTCCGATCACGGGGGTCATTTAGAAGACCGTGGGGCCTGGGGTCCGAGAGGTGGCTGGAACGGCATCTACAGAGGAGGCAAAGCCATGGGTGGCTGGGAAGGAGGGATCCGCGTCCCCGGTATCCTCCGCTGGCCTGGCAGGCTGCCCGCCGGCGCCCTGATCGACGAACCCACCAGCCTCATGGATATTTACCCAACACTCGTCAAGCTTGCCGGGGGAGAGCTTCCAGGAGACAGGGTCATCGACGGCCGTGACTTAATGCCACTGATCGAGGGGAAGGTCCGCCGGTCGGAGCACGAGTTCCTGTTTCACTACTGCGGCGCGTATCTGAACGCAGTCCGCTGGCGCCCCCGGGACAGCGATGCCATTTACAAGGCCCATTTCTTCACCCCTAACTTTTACCCAGAGGGAGCGATTGGCTGTTACAACCTGAGGATCTGCATGTGTCATGAGGGCTACGTCACGCCCCACGACCCCCCGCTGCTGTTCAACCTGGCGGAGGACCCCTCGGAGTCCACGCCCCTCTCCCCCGACCGGGAGCCGCGCTTCTCCGAGGTGCTGCGCAGGGTGCGGGACGCGGTGGCCGCGCATGAGCGCACGCTGACCCCGGTGCCCCACCAGCTGTCCTGGAGCCAGATCCTGTGGAGGCCCTCCCTGCAGCCGTGCTGTGGCGGACCCTTCCCCTTCTGCTCGTGTGCGGAGGAAGAGCGGAGCACGTGACAGCATGCGACGCACAGGCTGGGGGTCTTCCGCCTCGAGGGCATCCTGAGAAACCTAAACCCTTAAGCTGGAccaaagagatttttttttttttaaatttagatgTCAAAACGTACCAACACCTTCACCTATAGATGCTGTGACTCTTAACAGGATGAATATGTGAGCCGAACGCTGCCCGTGTTTTTTGTTCCAGGGCACTTTGTTTCAGAGGAGACgagtttatttaaacaaatgaatgacGCCTGTGAGATGCGAATTGTAAACCTCACGGCTGAGTCCGTTGTTTTTACGGTTCATTGGCCTctttaatctgtgttttaatgcagCAAAAccgtaaaaaataaaagatttgaGAACGGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG:

id description
K12374 ARSD_F_H; arylsulfatase D/F/H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85645 lncRNA downstream 56860 5587499 ~ 5587992 (-) True G68547
TU85635 lncRNA downstream 246617 5397828 ~ 5398235 (-) True G68537
TU85633 lncRNA downstream 310469 5334092 ~ 5334383 (-) True G68535
TU85610 lncRNA downstream 758569 4885925 ~ 4886283 (-) True G68514
TU85564 lncRNA downstream 996641 4647702 ~ 4648211 (-) True G68474
TU85674 lncRNA upstream 1727 5657305 ~ 5703927 (-) True G68572
TU85680 lncRNA upstream 21184 5676762 ~ 5678499 (-) False AMCG00014228
TU85691 lncRNA upstream 54240 5709818 ~ 5710080 (-) True G68581
TU85704 lncRNA upstream 123907 5779485 ~ 5782392 (-) True G68590
TU85711 lncRNA upstream 169926 5825504 ~ 5825929 (-) True G68595
AMCG00014215 mRNA downstream 780534 4859257 ~ 4864318 (-) True AMCG00014215
AMCG00014212 mRNA downstream 1038891 4588397 ~ 4605961 (-) True AMCG00014212
AMCG00014211 mRNA downstream 1078908 4560163 ~ 4565944 (-) True AMCG00014211
AMCG00014210 mRNA downstream 1124453 4511821 ~ 4520399 (-) True AMCG00014210
AMCG00014204 mRNA downstream 1255659 4384145 ~ 4389193 (-) True AMCG00014204
AMCG00014228 mRNA upstream 3494 5659072 ~ 5678472 (-) True AMCG00014228
AMCG00014226 mRNA upstream 23638 5679216 ~ 5698927 (-) True AMCG00014226
AMCG00014231 mRNA upstream 171181 5826759 ~ 5843215 (-) True AMCG00014231
AMCG00014230 mRNA upstream 190710 5846288 ~ 5850922 (-) True AMCG00014230
AMCG00014232 mRNA upstream 208778 5864356 ~ 5866524 (-) True AMCG00014232
TU85055 other downstream 2815708 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 3000945 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 3102155 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 3726670 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 3742237 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 1722510 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 1762020 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 2481753 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 2500651 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 2727707 8383285 ~ 8384224 (-) True G69156

Expression Profile