RNA id: AMCG00014228


Basic Information

Item Value
RNA id AMCG00014228
length 2299
RNA type mRNA
GC content 0.52
exon number 8
gene id AMCG00014228
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5659072 ~ 5678499 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTAGCATGCACCCCTGTCTGTCCCGCAGAGTGAAGTGCGCAGATCCGCAGCTCTGCCAGCGCGTCTGTCACTCCCTGCGCAGCCGGACTGGGGCTGCCTGCCGCCGGTCACAGCGCCCGGGCTAGTGTGAGGGTCTGAaacagcgcagatctgcagtcaacccccacccacccacacacacacaggagattATCCCTGCGCGGCCGGGCCTGGCGCACAGTCATCTGCCTGCTGGACTGATTTTCTTAAGGAAAGCAGCCCGACTCCAGCGTCATGCCAGGCAGTGTCTCTATGCCACACAAATCTGTGTGTCTGCGACGACTCCCCCGATTCACACAGTCTGCTCTCCTGTCCTCCCCCAGGGACGCCCTGACCTGTGTGTTTGACGAGGTGGTGGAGGTCAGTGCGCTGGACAGCGGAGACCAAGCGCACCTGGCCTTGATGAGACGCCCGGAGCTCGGCATCACCTTCACCAAGCTGCACTGCTGGGCCCTCACGCAGTTCACCAAGGGTGTGTTTCTGGATGCCGACACGCTAGTGCTGTGCAACGTGGACGAGCTGTTTGACCGGCAGGAGCTCTCTGCGGCGCCGGACCCGGGCTGGCCGGACTGCTTCAACTccggtgtgtttgtgttcagacCCTCCTTGGAAACTTACAACAGGCTGCTGCAGTTTGCCACGGAGAATGGCAGCTTCGATGGAGGAGACCAGGGGCTGCTCAACTCCTTCTTCAGTGACTGGTCTGTACGGGACATCGACAAACATCTGCCCTTTGTGTACAACCTCAGCACCAGCGCTACCGGAGCCGTGTCTCGGGACTTGGAGTCGCCCACCGGCCACCCCCTGGACCATTTTGTGAGTCTGTGGTGGGAGGTGTACAGCGCGCATGTGGTCCCTTTACTGATGCAGCACCCAGACTGTGAGGCCCCAGGGCCACCACCACAGAAGTACGACGCAGGAAGTGCAGAAGTCACAGACATGGAGGAACCGGTATCTTCTTCCCCGAGTGAAGAGATGCCTTCACAACCAGAGGACCCCCCCATGTCTGACACGTCCACGGAGACAACTTGGCTAAATCTCGAGGATCCTCCCGGGGCAGACGCCGGTGTTGCCGAGTGTGAGACCCCGGCCCCTTCGTCTGAGCCTAGTCCCTCTGAAACGCCTGCCATAGACCTGATGGACCTGGTGGCCAAGGCGTCCGAGCTCTCCATCAACCTTGAAGCAGAGACGTCCAGCCCGGACCACAGGAGGGAGTGGGAGCAAGGGCACATGGACTACATGGGCAAGGACGCCTTCGACAACATCAAGAAGAAACTGGACCAGTTTCTGGAGTAGAATGAAGGGAAACTAGTCCCTTTCCTGGAATTGTGGTTTGATGCGTCTTTACGTGTTGCTGTAGTGTGTAGATAAGTTGTACAGCACTTAGGTTTGATGTTATCATATTAACCACTTTCAACATTTCCAAATGGACAACTCATCAAATAATGCAGGATTTCAGAAGCCGGGATGTCTGCTTTTTCAGCGTTTCAGGATATATTGTGTCATAACTGCCAGGATAGCGGAAACACAGATTACAAGAGCTATTCAATGCAACTCGAGTCATTATGTGCGATGGTGCTTTAGCATTACTGTCtcgcctaataataataatattatcgtTTTAGATTTTCCTGGATCGATAGCGatggtgtttttatttgcacagACCATCTCCACTGTGCATTAAAGtcctctgttgttggaaaggagaaaataacaACAGGCAACACTCGGCAGGGAAGAGACAAAGCCTGGTTTTTCCTGTCtttccaggaagttatgacacgaCACGCCCTGATACACTGAAGAGCAGACATGCCAGCTCTTGACATCCTCCATGCTTTggtcaatttttaaatgtataaagttGTTTCTATGATGTACATGTACAGAACAGCAACACCTAAAGACGAATAAAACCTTCATTTTTAGGAGCCGCGCTACTCTTTCTAACCAAGCAGCCATAACAGATCTCTTCCCATGTTTACTGCACTTTGAGGGCAAATATTCACCCGGTTCAAGACCGTGTCGCTGAGAGGCCAAGCATGTTTTTACAAGGCTAAACTACGGTACATAATTGTGAAGCGCATCATTCGTAAGTGTGTCTGCAACTCCATGTCATACTCAAGCTCTAGAAACACCAGcaccttttcttttcctgtttttttttttctttctaaaacctttttgtttcaggaaagtaaatacaatgaggggaaaaaagtatttgatcccctgctgattttgtacgtttgccc

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85645 lncRNA downstream 71080 5587499 ~ 5587992 (-) True G68547
TU85635 lncRNA downstream 260837 5397828 ~ 5398235 (-) True G68537
TU85633 lncRNA downstream 324689 5334092 ~ 5334383 (-) True G68535
TU85610 lncRNA downstream 772789 4885925 ~ 4886283 (-) True G68514
TU85564 lncRNA downstream 1010861 4647702 ~ 4648211 (-) True G68474
TU85691 lncRNA upstream 31346 5709818 ~ 5710080 (-) True G68581
TU85704 lncRNA upstream 101013 5779485 ~ 5782392 (-) True G68590
TU85711 lncRNA upstream 147032 5825504 ~ 5825929 (-) True G68595
TU85835 lncRNA upstream 375639 6054111 ~ 6056331 (-) True G68680
TU85822 lncRNA upstream 381024 6059496 ~ 6062496 (-) False AMCG00014241
AMCG00014227 mRNA downstream 3494 5644852 ~ 5655578 (-) True AMCG00014227
AMCG00014215 mRNA downstream 794754 4859257 ~ 4864318 (-) True AMCG00014215
AMCG00014212 mRNA downstream 1053111 4588397 ~ 4605961 (-) True AMCG00014212
AMCG00014211 mRNA downstream 1093128 4560163 ~ 4565944 (-) True AMCG00014211
AMCG00014210 mRNA downstream 1138673 4511821 ~ 4520399 (-) True AMCG00014210
AMCG00014226 mRNA upstream 744 5679216 ~ 5698927 (-) True AMCG00014226
AMCG00014231 mRNA upstream 148287 5826759 ~ 5843215 (-) True AMCG00014231
AMCG00014230 mRNA upstream 167816 5846288 ~ 5850922 (-) True AMCG00014230
AMCG00014232 mRNA upstream 185884 5864356 ~ 5866524 (-) True AMCG00014232
AMCG00014233 mRNA upstream 207999 5886471 ~ 5891251 (-) True AMCG00014233
TU85055 other downstream 2829928 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 3015165 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 3116375 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 3740890 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 3756457 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 1699616 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 1739126 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 2458859 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 2477757 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 2704813 8383285 ~ 8384224 (-) True G69156

Expression Profile