RNA id: AMCG00014229


Basic Information

Item Value
RNA id AMCG00014229
length 2998
RNA type mRNA
GC content 0.49
exon number 9
gene id AMCG00014229
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5866905 ~ 5879257 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGAAATGCCCACATTCCTGCCCCGACTGCCCCAGCCGGATTTTTCAGCTGGAAACTATTGGGAAAAAAGACTGGGCTGGTCTGTTCAGACACTTTTTCTCCTAGTTAAGAAAgtactaataataacacatttttatccCTAAAAATGGCCTCGTCTGATGTAGCCCGACAGCTGCAGGATAAAAATGCCCGTCCACTCTCCCTGTCTGGCCATGTTGGGTTCGACAGCTTGCCAGATCAACTGGTGAACAAATCCACGAGCCAGGGCTTCTGCTTCAACATCCTGTGCATCGGTGAGACGGGAATTGGCAAGTCGACTCTCATGGACACGCTGTTCAACACCAACTTTGAGAACTTCGAGTCCTCTCACTTCGAGCCCAAGGTGAAGCTGAGGGCCCAGACCTACGACCTGCAGGAGAGCAACGTCCGGCTGAAGCTCACCATCGTCAACACGGTGGGCTTCGGGGATCAGATGAACAAACAAGAAAGGCAAGGCTACCAGCACGTGGTGGACTACATCGACACGCAGTTCGAGACATACCTGCAGGAGGAGCTGAAGATCAAACGCTCGCTGCACAACTACCACGACTCGCGCATCCACGCCTGCCTGTACTTCATCGCGCCGTCGGGACACTCGCTCAAGTCCCTGGACCTGGTCACCATGAAGAAGCTCGACAGCAAGGTCAATATCATCCCGGTCATCGCCAAGGCCGACACCATCTCCAAGAGCGAGCTGCACAAATTCAAGATCAAGATCATGAGCGAGCTGGTCAGCAACGGCGTCCAGATCTACCAGTTCCCCATCGATGACGAGACAGTGGCCAAGATCAACACGGCGATGAACGGTCACCTGCCCTTCGCTGTCGTTGGCAGCACAGAGGAGGTGAAGATCGGAAACAAAATGGTGAAAGCCCGACAGTACCCTTGGGGCGTTGTGCAAGTGGAGAACGAGAACCACTGCGACTTCGTGAAGCTGAGAGAGATGCTGATCTGCGTGAACATGGAGGACCTGCGGGAGCAGACGCACACGCGCCACTACGAGCTGTACCGCCGCTGCAAGCTGGAGGAGATGGGCTTCAAGGACACGGACCCCGAGAGCAAGCCCGTCAGCCTGCAGCAGACCTACGAGACGAAGCGGCAGGAGTTCCTGGGGGACCtgcagaggagggaggaggagatgagGCAGATGTTCGTGCAGCGAGTGAAGGAAAAGGAGACGGAGCtgaaggaggcagagagagagCTGCAGGGCAAGTTTGAGCACCTGAAACGGGTGCACCAGGAGGAGAGGATGAAGctggaggagaagaggaagcTGCTGGAGGACGAGATCAACACGTTCAGCAAGAGAAAAGCCGCCACAGAGCTGCTCCAGGCGCAGGCCTTCAACACGTCGGCCAACGTGAGCATCAAGAAAGACAAAGACCGTAAAAAGTAAGCCCTGGTTTCTTTCAGTAGTTATGTATTCGTTCAGCTTCTTCTGAAGGAGTGttttttgtccttttgttttattaagcaaaactaaaagatacattttgcccgttgagtctgtctgtctctctcgcgCGCGCgcgctgtctgtctgtctgtctttgatcTCGCCGGGACCGAGAACAAGCAGGAGCCTCCGATTCACATGATGAGAGCAGGGCGGGGAGAGAGCTGTGATCGGACAGGGGTCAAATCCTCATTTTAGAGTGCATCTAGATCGGTGGCACGATGAATGAATGATCTCGGCTCTGAAAAGTCTCTTTAATTCAAAGTCATTTTATGAACAATTGGTTGACATAATTCAACATACGTTTATTTACTGACTATTCTGCTCTCTTCCAGCTCTGGGTTCATGTGAAGACGCTGTGCTGAAGACGACTGCCGTCTGTTAGACGTAGActgtaataaatacagaatattatCTCTATCGCTCTTCCCATCATTACTAGTCTCACAgtgttgtgtattttaacatcTGCTGCCTGCTGGGCACACGTGTGTCATGCTGTGTATATATTCAtgtgtgtgctgttgttgtgttATTAATGTCGTTGTCCATTGCTTCTCTTAAACCACTGCCTCACGGGAGCCGTCTCCCCCTGTGTGCGTTCGCTCTGACCTGACGTCCGCTCTCTGTGAGGGTCCGCTGCTTTCGGGACCCTCCGCTCCGTCTCAGTCGTGCGTGTAAAGGACTGGATTCGACTCGagcatttaaatacagaagtgCCAGTAGATTTAAACGTCTTGGGTCGATGCTTGAGGACACATCCTAAACCCCAAGCCCCTTTGACACGCGTAGCGGGTCCAAATGAAGTTCTGTCCCCACGATGCCTTACTCCTCCAGTCCAGTCCATCCCTCCATCCGTTCTGTCGCTGGCGTCAATAAAAAAAGGCGCCAAATCTTTCCAAACCTCGTCTTGCCTGGGCCAATCTTTAAGCATGAGACCAGAACCCCAATGGACagtttggtttttttttgtttttaattcagatatCATGGTACAACAGGTCAATGCAAAtaccttttcttattttgtgtgtttgtaatccAAAGTTTGGCTGTACAGAAGTTGCCGCTGCATTTCAAACAGTTTCAACTTCTTGTTTCCAAAACTGATCTAAAAACGCTCTTTTCCTAGTGAATAGACTATGCAAACATGGGTCTTTTAGCAATACAGCCCACACTTGTCACCGATTGCCTTAAAAACCATTCCGTGTGCCTTCTGCCTCCTTTACACGGAGActattgaaatgaaaagggaGAAATTTTGTACTAGATGCTGTTTACATCGAACTTGTTCCATGTGTTGGTACTTGTTGGCCGAGCGTCACCGCAGTATCGACAGTGTCACCGCCTGCCCTGAAGGATGAGATTTCACAAAGAATCCACAGGATGACTCAGAAAACATTATGCGtaacttttatatataaacttgtATTTAAGTATACAGTGTTATTGAGGGACTAAATATTCATTGAATATTTTTTAGCAACAATAAAAAATTT

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16940 SEPT10; septin 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85700 lncRNA upstream 84519 5779378 ~ 5782386 (+) True G68589
TU85659 lncRNA upstream 162896 5657250 ~ 5704009 (+) True G68559
TU85636 lncRNA upstream 415384 5451288 ~ 5451521 (+) True G68538
TU85603 lncRNA upstream 1009675 4857029 ~ 4857230 (+) True G68509
TU85589 lncRNA upstream 1081304 4785326 ~ 4785601 (+) True G68497
TU85751 lncRNA downstream 17813 5897070 ~ 5956185 (+) True G68623
TU85765 lncRNA downstream 133425 6012682 ~ 6013059 (+) True G68635
TU85767 lncRNA downstream 175278 6054535 ~ 6056347 (+) True G68637
TU85787 lncRNA downstream 194460 6073717 ~ 6110306 (+) False G68649
TU85780 lncRNA downstream 227784 6107041 ~ 6110306 (+) True G68649
AMCG00014224 mRNA upstream 92144 5755529 ~ 5774761 (+) True AMCG00014224
AMCG00014225 mRNA upstream 126984 5721897 ~ 5739921 (+) True AMCG00014225
AMCG00014223 mRNA upstream 223416 5607773 ~ 5643489 (+) True AMCG00014223
AMCG00014222 mRNA upstream 259151 5595455 ~ 5607754 (+) True AMCG00014222
AMCG00014221 mRNA upstream 316807 5508024 ~ 5550098 (+) True AMCG00014221
AMCG00014237 mRNA downstream 154180 6033437 ~ 6054435 (+) True AMCG00014237
AMCG00014243 mRNA downstream 355546 6234803 ~ 6239921 (+) True AMCG00014243
AMCG00014253 mRNA downstream 852367 6731624 ~ 6732517 (+) True AMCG00014253
AMCG00014259 mRNA downstream 1160497 7039754 ~ 7046875 (+) True AMCG00014259
AMCG00014260 mRNA downstream 1171079 7050336 ~ 7054907 (+) True AMCG00014260
TU85565 other upstream 1214941 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 1214941 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 3156576 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 1466938 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 1534383 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 4123801 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 8457601 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 9796374 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073715 False 2069 mRNA 0.47 10 NC_007120.7 55857193 ~ 55875077 (+)