RNA id: AMCG00014231


Basic Information

Item Value
RNA id AMCG00014231
length 1089
RNA type mRNA
GC content 0.57
exon number 8
gene id AMCG00014231
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5826759 ~ 5843215 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATTCTGGCAGTGAGGCCGAGTACCCGAGGAAAATACTGGACTATATGGAAGGCTTCCTGGTGTCCAAGCTGCTGGTTTCAACCCTCCCACTGACCGAGCCCCCTTCTCCCCTGCAGACGCTGTTCGCCGCCTGTGAACTCGGGGTGTTTGACTTCCTGCTGGCGTCCGAGGGGCCTGTCTCTACGGCGGACGTCGCCCGGGGCCTGAGTGCCAGTGTGGACGGCATGGAGAGGCTGCTGACAGCCTGCGCAGGTCTGCAGCTCCTGCACACCCACACCCGGGACGGGGAAGCATGCTACAGCAACACAGAGGACTCAAGAATATACCTGACGAAGAGCAGCCCTAAGTCTTTATACCATTCGATCCAGTACAGCTCCAACACTATCTACTTGTGCTGGCACTACTTGACAGATGCGGTGAGGGAAGGGAAAAACCAGTATGAGAAGGCGTTCGGTGTCAGCTCCAGCGATCTCTTCGAAGCCCTGTACAGGTCAGATGAAGAGATGATCAAATTCATGCAGCTCATGAACTCCGTCTGGAATATCTGCGGCAGAGATGTTGTGACCGCTTTCGACCTCTCGCCTTTCAAGAGCATCTATGACCTTGGAGGTTGCAGCGGCGCTCTGGCCAAACAATGTGTGTCTGCGTATCCCGAGACCACGGTGACCATTTTCGACCTCCCGAAGGTGGTGCAAACGGCGAAGGAGCACTTTGTGCCGACGGATGAGAGGAGGATTTCTTTCCATGAAGGAGACTTCTTCAGAGACGCCCTGCCTGAAGCGGACCTCTACATCCTGGCCCGCATCCTCCATGACTGGACCGACGTCAAGAGCCTGGAGCTGCTTACGAAGGTCCACCATTCCTGTCGCCCAGGTGGGGGGCTGCTGCTGATCGAAGCCCTGCTGAACGAAGACCGAAGCGGACCCTTGACCACCCAGCTCTACTCGCTCAACATGCTGGTGCAGACGGAGGGGAAGGAGAGAAGCCCATCCGAGTACAGCCGTCTCCTCTCCAACGCCGGGTTCACACACATCCAGGTGCGGAGGACTGGCAAGATCTACGATGCCATTTTGGCGAGGAAGTAG

Function

GO: NA

KEGG:

id description
K00543 ASMT; acetylserotonin O-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85711 lncRNA downstream 830 5825504 ~ 5825929 (-) True G68595
TU85704 lncRNA downstream 44367 5779485 ~ 5782392 (-) True G68590
TU85691 lncRNA downstream 116679 5709818 ~ 5710080 (-) True G68581
TU85674 lncRNA downstream 122832 5657305 ~ 5703927 (-) True G68572
TU85680 lncRNA downstream 148260 5676762 ~ 5678499 (-) False AMCG00014228
TU85835 lncRNA upstream 210896 6054111 ~ 6056331 (-) True G68680
TU85822 lncRNA upstream 216281 6059496 ~ 6062496 (-) False AMCG00014241
TU85837 lncRNA upstream 229956 6073171 ~ 6075910 (-) False AMCG00014241
TU85829 lncRNA upstream 263824 6107039 ~ 6108358 (-) False AMCG00014241
TU85889 lncRNA upstream 691265 6534480 ~ 6534701 (-) True G68722
AMCG00014226 mRNA downstream 127832 5679216 ~ 5698927 (-) True AMCG00014226
AMCG00014228 mRNA downstream 148287 5659072 ~ 5678472 (-) True AMCG00014228
AMCG00014227 mRNA downstream 171181 5644852 ~ 5655578 (-) True AMCG00014227
AMCG00014215 mRNA downstream 962441 4859257 ~ 4864318 (-) True AMCG00014215
AMCG00014212 mRNA downstream 1220798 4588397 ~ 4605961 (-) True AMCG00014212
AMCG00014230 mRNA upstream 3073 5846288 ~ 5850922 (-) True AMCG00014230
AMCG00014232 mRNA upstream 21141 5864356 ~ 5866524 (-) True AMCG00014232
AMCG00014233 mRNA upstream 43256 5886471 ~ 5891251 (-) True AMCG00014233
AMCG00014236 mRNA upstream 49996 5893211 ~ 5893946 (-) True AMCG00014236
AMCG00014234 mRNA upstream 53352 5896567 ~ 5906253 (-) True AMCG00014234
TU85055 other downstream 2997615 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 3182852 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 3284062 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 3908577 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 3924144 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 1534873 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 1574383 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 2294116 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 2313014 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 2540070 8383285 ~ 8384224 (-) True G69156

Expression Profile