RNA id: AMCG00014232


Basic Information

Item Value
RNA id AMCG00014232
length 1737
RNA type mRNA
GC content 0.62
exon number 2
gene id AMCG00014232
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5864356 ~ 5866524 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTGGTTTGCCGACCAGCCCTGGTTGCTAAGAGGCGGGGATTGTTGTCGTGCGGCTCCGGGGCGGACAGGCGAGGTCTCTCACAGCAGCCGCGCCGATGAGGGATCACCCGGGGCCGCCGCCGTCAGCTGCGTTGTTAGCCCGTTTCACAGTTTCACGCCGGAGGAGCAACGCACAGCAGCCCCCTTTTGTCTGCCCGTCGTGCCAATGGCGTCCCAGTGCACCCAAGAAGCGGTGCTCCGGTACCTGGCCGAGCGAGGGGGACGTGTGAGCAACGCGGAGCTGATCGACCACTTCAAGCCCCTGCTGCCCAGCGAGCCGGCCAGCAAAGCGGCGGCCAAGGAAGCTTTCAAGGGCTTCGTGGACACCGTGGGCTTTGTGAAGCCGGAGAACGGGGTGAAATACGTGTTTCTCAAGAAGAAGTACAGGGATGCGCTGAGACCGAGCCCCGGCGGGGAGGCTGATGGAGAGAGTCGGGGTAGTGGATTAACGGGAGCGGGGCAGGTCTCTCCCACCGGTCCAGCTGTGGTTAACGGGGTTAGGAGGGACCCGGGATCTGGCCAGTCTGCATCTGCATCTGCATCTGCACGCTTTGATTCAGCTGCAGAGGTGCCTGCCAGCGAGCTTGAACTTGATCGCATACAGGGTGTGGATTCCAGCACCGATTCCCCAGCGCCGGAGAGCCTGCCTGAAGAGGAAGACGGTGATCTGGGAGCTGGCAAAGGTGTGGCACCGATGATTTCCAGGCGGAGAGCTTCCAAGGGGTCGCAGCGCAGCCTCTTATCCAGTCACCCGTCCGAGGAGGGGGCCGAGGACGGTCAGGTGGACGCGGGGGGCGACGGCTACACCCCGAGGGGCAGTAGGAGNNNNNNNNNNGAGCTGCTCATCAACAGCTCCCCCCAACTCCGGCGCAGCGTGGTTTTGAAGAACCCCGGGTCGGTGTCGGCCAGGCAGAGGGACTCGGTGAGGAGTGACAGCGACTCGGCCTCCCTGATGTCCTCCACCGATGAAGACGGTGGCTCGGTGACTCTAGACCCACTGGAGCACGAGTGGATGATGTGTTCCTCTGACGGGCACTGGGAGAGTCTCCATCGCCTGCTCTCCTGCGAGCCCAACCTCATTGTCAAGAAGGACTTCGTCACAGGCTTCACCTGCCTGCACTGGGCCGCCAAACAAGGCAAGCCGGAGCTCATCGCCTTGCTGGTCAACTTTGCCAAGCACCACGCCGTGCCACTGAACATCAACTGCCGCTCCAGTGCTGGCTACACGCCCCTGCACCTGGCAGCCATGCACAACCATGTGGAGGTGGTGAAGCTGCTTGTGGGCGCCTACGATGCCGACGTGGATGCCAGGGACTACAGCGGTAAGAAGGCCTGGCAGTACCTCGGGCACAGCGTGGCCGAAGACATACGGGAGATCGTGGGTGCGGGCGGCGACTTGGATGCCGAGAACGTGGACAACGTGGCGGGGCGCTGGAGGCTGTCCAAGGTCCTGCCCGCCAACCTGATGCCACTCAAGCTGCTCAACGTCCCCGAGGAAGATGCCTGCGACGCCGGGGGCCCCGTGAGGCCCAAGTCTGTGTACAGGAAGACCTCCATCAGCAGGATTAAGCCCAAGCTCCACAAGATCAAATTTAAGACACAGATCATTCACACCACCTCTTTCAAAGAGATGGAAGAGGGGGACAGGCCGCTGAAGAGCCCGGGGAAGTCCCGGCCCAAGTCGACTCTGTTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85711 lncRNA downstream 38427 5825504 ~ 5825929 (-) True G68595
TU85704 lncRNA downstream 81964 5779485 ~ 5782392 (-) True G68590
TU85691 lncRNA downstream 154276 5709818 ~ 5710080 (-) True G68581
TU85674 lncRNA downstream 160429 5657305 ~ 5703927 (-) True G68572
TU85835 lncRNA upstream 187587 6054111 ~ 6056331 (-) True G68680
TU85822 lncRNA upstream 192972 6059496 ~ 6062496 (-) False AMCG00014241
TU85837 lncRNA upstream 206647 6073171 ~ 6075910 (-) False AMCG00014241
TU85829 lncRNA upstream 240515 6107039 ~ 6108358 (-) False AMCG00014241
TU85889 lncRNA upstream 667956 6534480 ~ 6534701 (-) True G68722
AMCG00014230 mRNA downstream 13434 5846288 ~ 5850922 (-) True AMCG00014230
AMCG00014231 mRNA downstream 21141 5826759 ~ 5843215 (-) True AMCG00014231
AMCG00014226 mRNA downstream 165429 5679216 ~ 5698927 (-) True AMCG00014226
AMCG00014228 mRNA downstream 185884 5659072 ~ 5678472 (-) True AMCG00014228
AMCG00014227 mRNA downstream 208778 5644852 ~ 5655578 (-) True AMCG00014227
AMCG00014233 mRNA upstream 19947 5886471 ~ 5891251 (-) True AMCG00014233
AMCG00014236 mRNA upstream 26687 5893211 ~ 5893946 (-) True AMCG00014236
AMCG00014234 mRNA upstream 30043 5896567 ~ 5906253 (-) True AMCG00014234
AMCG00014235 mRNA upstream 41618 5908142 ~ 5911400 (-) True AMCG00014235
AMCG00014238 mRNA upstream 137113 6003637 ~ 6004228 (-) True AMCG00014238
TU85055 other downstream 3035212 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 3220449 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 3321659 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 3946174 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 3961741 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 1511564 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 1551074 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 2270807 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 2289705 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 2516761 8383285 ~ 8384224 (-) True G69156

Expression Profile